Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 570 / 0 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24300 64 / 1e-10 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 61 / 1e-09 AMT1;5 ammonium transporter 1;5 (.1) AT4G13510 58 / 1e-08 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 45 / 0.0001 ATAMT1;2 ammonium transporter 1;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023012 [exp] 837 / 0 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 829 / 0 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 780 / 0 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 629 / 0 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 628 / 0 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 497 / 1e-173 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 496 / 2e-173 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 491 / 1e-171 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 462 / 4e-160 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025692 [exp] 729 / 0 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 531 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 530 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 524 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 522 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 513 / 7e-180 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 513 / 8e-180 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10002208 [exp] 481 / 1e-167 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 464 / 7e-160 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 453 / 9e-157 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [poplar] [flax] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Potri.019G000800.1 pacid=42774537 polypeptide=Potri.019G000800.1.p locus=Potri.019G000800 ID=Potri.019G000800.1.v4.1 annot-version=v4.1 ATGGCTGCTCCTCCACCTAACCCAGTCCCAGTGGCATACCAAGGAGGCTTAGCTGCTTCAGTTCCTGACTGGTTAAACAAGGGCGATAACGCATGGCAAA TGATCTCAGCCACCCTTGTTGGACTCCAGAGTGTGCCAGGACTTGTAATTCTCTATGGAAGCATTGTCAAGAAAAAATGGGCAGTCAATTCAGCTTTCAT GGCCTTTTACGCTTTCGCAGCTGTTGTAATCTGCTGGGTGGTTTGGGCCTACAAAATGTCTTTTGGGGATAGGCTCTTCCCCTTTTGGGGCAAAGCAGGA CCTGCCTTGGCCCAGAAGTTTCTAATCAAGCAAGCTGCACTCCCTGAGACCACACAGTCCTACGATAACGGTGGTGTGGAGACTGCAATGGCTACACCAT TTTATCCCATGGCTTCCATGGTTTGGTTTCAGTGCGTGTTTGCTGCAATCACTCTTATTCTTTTGGCTGGATCAGTGCTTGGAAGAATGAATTTTAAGGC TTGGATGGCTTTTGTGCCACTTTGGCTCACTTTCTCTTACACTGTTGGTGCCTTCAGCTTGTGGGGTGGTGGATTCTTGTTTCACTGGGGTGTCATGGAC TATTCTGGTGGTTATGTTATTCATCTTTCTTCAGGGATCGCCGGCTTGACTACTGCCTTTTGGGTAGGTCCAAGATCATCAAAGGATAGAGAGAGATTTC CACCGAACAATGTACTGCTAATGTTAGCAGGGGCAGGGCTGCTGTGGATGGGATGGGCTGGCTTCAACGGCGGAGATCCATACACTGCCAATATTGACTC TTCCATGGCCGTTCTTAACACTAACATTTGCGCAGCTACTAGCCTTCTTGTATGGACCTGGCTAGATGTCATTTTCTTCAAGAAACCTTCTGTCATCGGT GCTGTTCAGGGCATGATAACTGGCCTTGTTTGCATTACTCCTGGTGCAGGTCTTGTTCAAGGATGGGCTGCCATAATCATGGGAATTTTATCTGGTAGTG TTCCATGGTTTACCATGATGATTGTTCACAAAAGATGGACACTACTGCAAAAAATTGATGACACACTAGGAGTGTTTCACACCCATGCTGTTGCTGGCCT TCTAGGGGGTGTTCTAACAGGCCTCTTTGCAGAACCTGAGCTCTGTGCACTATTTTTGCCGGTGACAAACTCAAGGGGCGGTGTCTATGGTGGTTCCGGT GGAATCCAAATACTCAAACAACTAGTTGGCGGTGCTTTCATTATTGGATGGAACGTTGTCGTCACATCAATTATTTGTGTAGTGATAAACTTTGTGATAC CATTGAGAATGTCTGAGGAGCAATTGCTTATTGGGGATGATGCTGTGCATGGTGAGGAGGCTTATGCATTGTGGGGCGATGGAGAAAAATATGATGTAAC CAAGCATGGGGATATCACAGAACATCACATGGAAACGAGGACATCAACTGGTGCTACTCAAGTGATGTAG
AA sequence Show only first row Show all	>Potri.019G000800.1 pacid=42774537 polypeptide=Potri.019G000800.1.p locus=Potri.019G000800 ID=Potri.019G000800.1.v4.1 annot-version=v4.1 MAAPPPNPVPVAYQGGLAASVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMAFYAFAAVVICWVVWAYKMSFGDRLFPFWGKAG PALAQKFLIKQAALPETTQSYDNGGVETAMATPFYPMASMVWFQCVFAAITLILLAGSVLGRMNFKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMD YSGGYVIHLSSGIAGLTTAFWVGPRSSKDRERFPPNNVLLMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIG AVQGMITGLVCITPGAGLVQGWAAIIMGILSGSVPWFTMMIVHKRWTLLQKIDDTLGVFHTHAVAGLLGGVLTGLFAEPELCALFLPVTNSRGGVYGGSG GIQILKQLVGGAFIIGWNVVVTSIICVVINFVIPLRMSEEQLLIGDDAVHGEEAYALWGDGEKYDVTKHGDITEHHMETRTSTGATQVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G000800 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023012 [exp]	1.00	0.9879
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.018G113300 [exp]	2.44	0.9615
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023022 [exp]	2.82	0.9615
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023010 [exp]	4.89	0.9357
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	4.89	0.9472
AT1G30860			RING/U-box superfamily protein...		Potri.001G074800 [exp]	5.91	0.9428
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G002300 [exp]	7.41	0.9554
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	8.12	0.9258
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	9.48	0.9406
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.004G003000 [exp]	9.79	0.9243	Pt-ACO1.2

Compare expression of checked genes

Potri.019G000800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.