Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21060 741 / 0 RBL RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 54 / 1e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 53 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 52 / 6e-07 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 49 / 1e-05 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 46 / 4e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 45 / 0.0002 transducin family protein / WD-40 repeat family protein (.1) AT2G43770 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305500 [exp] 942 / 0 AT3G21060 757 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 66 / 2e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 56 / 3e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 50 / 2e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 50 / 5e-06 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 48 / 1e-05 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 48 / 2e-05 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G148500 [exp] 47 / 2e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 47 / 2e-05 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035969 [exp] 799 / 0 AT3G21060 737 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025693 [exp] 792 / 0 AT3G21060 738 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 57 / 2e-08 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 56 / 5e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 51 / 1e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 50 / 6e-06 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 49 / 8e-06 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10010384 [exp] 49 / 1e-05 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10039636 [exp] 47 / 2e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012475 [exp] 46 / 0.0001 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.019G000900.1 pacid=42774692 polypeptide=Potri.019G000900.1.p locus=Potri.019G000900 ID=Potri.019G000900.1.v4.1 annot-version=v4.1 ATGAATGCACCAATTATTGATCCACTGCAAGGGGATTTTCCAGAGGTAATAGAGGAGTATTTGCATCATGGGGTTACGAAGTGCATTGCTTTCAATCGCC GCGGCACGCTTCTTGCTGCTGGATGTGCTGATGGAAGTTGTGTTATTTGGGACTTTGAGACCAGGGGAGTTGCAAAAGAGCTCCGGGATAAAGATTGTAT TGCTGCCATAACAAGTATCTGCTGGTCGAAGTATGGTCATCGTATTCTTGTGTCATCTGCTGACAAATCACTAATACTTTGGGATGTTGTCAGTGGAGAG AAGATTACACGTATTACTCTTCATCACACCCCACTACTAGCCCGGCTACATCCTGGTTCCTCTCTTCCATCTCTCTGCCTGACATGCCCTCTTTCATCTG CTCCCATGATTGTAGATTTTAACACGGGAAACACTACTGTGCTACCAGTTACAGTACCTGAAGCGGACAGTGGACCTGCCCCTCCATCACGTAATAAACC CTCTGATGGTCCCCCTTACACCCCAACTGCTGCATGCTTTAACAAGTTTGGGGATCTGGTTTATGTGGGAAACTCTAAAGGAGAAATACTTATAATAGAT CACAAAAGCATTCAAGTGCATGCCATGGTTCCCACTCCTGGTGGTGCAGTTATCAAGAACATAGTGTTCAGCAGAGATGGTCAGTATCTTCTCACAAATT CAAATGACCGGACAATCAGGATATATGAAAATCTTCTTCCACTGAAAGATGGTCTCACTGTGCTGGGGCACCTGAACAAGACTGTTGATGAGGTAGCTGG TGTTGAGAAAATGAAGGCTGTTGGATCAAAGTGCTTAGCACTTTTCCGGGAGTTCCAGGATACTATCACCAAAGTGCACTGGAAAGCACCTTGTTTCAGT GGTGATGGGGAATGGGTGATCGGTGGTTCTGCAAGCAAGGGAGAGCACAAGATCTACATATGGGATAGGGTTGGACATCTTGTAAAAATCCTTGAAGGTC CAAAAGAGGCATTGATTGATTTAGCATGGCATCCTGTTCACCCCATTATCGTCTCTGTTTCCTTGACTGGCATGGTTTATGTTTGGGCTAAGGACCATAC TGAGAACTGGAGTGCATTTGCCCCGGACTTCAAAGAGCTAGAGGAGAATGAGGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACTGAA AAGGTAAAAGAATCAGATATTAATGAAGATGATGAAGTTGATATTGTAACAGTGGAGAAAGATGCTTTCAGTGATTCAGATATGTCTCAAGAAGAAATAT GTTTCTTGCCAGCTACCCCATGTCCTGACGTTCCTGAGCAACAAGACAAGTGTGTGGGAAGTTCTTCAAAGTTGATGGATTCTAATAACTCTGGATCCCC GCTTTCTGAAGAAGCTGGACAGAATGGACAAGCAATGAATCATGCATCAAGTCCTCTTGAAGAGGACACAGGAGGGACACGCATGAAGAGAAAACGAAAA CCTTCAGAAAAGGGGTTGGAATTGCAGGCAGAGAAGGGCAGGAAACCCTTGAAATCTTATGGTAGAGTGTCAAAAGTAAGGAGTAAACCTGTTGCTGATC TGGATATCACTAACGGAATATATGGGGATGATATTTCTGACTGA
AA sequence Show only first row Show all	>Potri.019G000900.1 pacid=42774692 polypeptide=Potri.019G000900.1.p locus=Potri.019G000900 ID=Potri.019G000900.1.v4.1 annot-version=v4.1 MNAPIIDPLQGDFPEVIEEYLHHGVTKCIAFNRRGTLLAAGCADGSCVIWDFETRGVAKELRDKDCIAAITSICWSKYGHRILVSSADKSLILWDVVSGE KITRITLHHTPLLARLHPGSSLPSLCLTCPLSSAPMIVDFNTGNTTVLPVTVPEADSGPAPPSRNKPSDGPPYTPTAACFNKFGDLVYVGNSKGEILIID HKSIQVHAMVPTPGGAVIKNIVFSRDGQYLLTNSNDRTIRIYENLLPLKDGLTVLGHLNKTVDEVAGVEKMKAVGSKCLALFREFQDTITKVHWKAPCFS GDGEWVIGGSASKGEHKIYIWDRVGHLVKILEGPKEALIDLAWHPVHPIIVSVSLTGMVYVWAKDHTENWSAFAPDFKELEENEEYVEREDEFDLIPETE KVKESDINEDDEVDIVTVEKDAFSDSDMSQEEICFLPATPCPDVPEQQDKCVGSSSKLMDSNNSGSPLSEEAGQNGQAMNHASSPLEEDTGGTRMKRKRK PSEKGLELQAEKGRKPLKSYGRVSKVRSKPVADLDITNGIYGDDISD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.019G000900 [exp]	0	1
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	1.73	0.7552
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	6.00	0.7329
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	8.71	0.6798
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	9.00	0.7382
AT2G46520			cellular apoptosis susceptibil...		Potri.002G172700 [exp]	12.00	0.6472
AT1G08220			unknown protein		Potri.009G002000 [exp]	12.44	0.7261
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.004G223800 [exp]	18.70	0.7094
AT2G23310		ATRER1C1, ATRER...	Rer1 family protein (.1.2)		Potri.005G141700 [exp]	19.74	0.7506
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.017G075200 [exp]	21.00	0.6791
AT1G75140			unknown protein		Potri.002G262900 [exp]	23.97	0.6729

Compare expression of checked genes

Potri.019G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.