Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 781 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G28380 565 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 439 / 3e-147 MAC/Perforin domain-containing protein (.1) AT1G29690 417 / 1e-139 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305600 [exp] 1070 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.003G006500 [exp] 813 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 635 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 624 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 506 / 6e-174 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 494 / 4e-169 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 479 / 5e-163 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 427 / 1e-143 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 416 / 3e-139 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012717 [exp] 847 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 847 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10035789 [exp] 790 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 723 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 572 / 0 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 476 / 6e-162 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 473 / 1e-160 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 422 / 1e-141 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 409 / 1e-136 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10034586 [exp] 376 / 1e-119 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF01823 [poplar] [flax] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Potri.019G001000.1 pacid=42773699 polypeptide=Potri.019G001000.1.p locus=Potri.019G001000 ID=Potri.019G001000.1.v4.1 annot-version=v4.1 ATGAGGAGTGCGAAAAAAGCTGCAGAAGAAGCAATAGAGGCAATTGGGTTAGGATATGATCTGGGTTTTGATTTAAGGCTTAAGTATTGCAAGAAAAACT CACCAAGATTGATAGGGATTAATGATGATGGTAAACAAGTGCATAATATGGTGATTCCTGGTGGGTTTTCTATTCCTAATGTTCCTAAATCTATCAAATG TGATAAAGGCGAGCGTTTGAGGTTTAGTTCTGATGTTCTTTCTTTTCAACAGATGTCAGAGCAGTTCAACCAGGAATTATCTCTTTCTGGAAAAATTCCT TCGGGCCATTTCAATTCTGCATTTGAATTTTCAGGAGTTTGGCAGAAAGATGCTGCCAATACTAAAGCCCTTGCTTTTGATGGCGTTAACATCACTCTTT ACAGCATTGCACTAGATAAGTCGCAGGTGGTGCTATGTGATCATGTTAAAGAAGCTGTACCATCATCATGGGAACCTGCTGCATTGGCAAGTTTTATTGA GAAGTATGGTACGCATGTTATTGTTGGCATCAAAATGGGCGGAAAGGACATGATATGTATGAAGCAACAACATTCATCGCCTCTCCCACCTGTTGATGTA CAGAAAAAATTAAAGGATATGGCTGACAAAATGTTTGTAGATGGTGTAAGGAGCACCATGAATTCTGATAAATTTTATGACAGAGAAAAGGTTCTCCAGC TGCAGGGGCTGCCATTCATGGACCAATTGCCATCTAGTTCTTATTCCCAGACAGAGCACATTAAATTCATTAGCAAGCGCAAAGGTGGAAATAAAAACCT GCCACACAAGGAGTGGTGTCAGACTGTTCAGACTGAACCTGATGTTATCTCAATGTCATTTGTGCCAATCACATCATTATTGAGTGGAATCAATGGGAGT GGATTTTTGACCCATGCCATTAATCTCTATATCCGTTATAAGCCACCACTTGATGAATTACACCAGTTTTTGGAGTTTCAGCTTCCAAGGCAATGGGCAC CAGTATTTGGTGAGCTTGCCCTTGGTCCTGACAGGAAGCAACAAAGTAACGCATCTTTGCAGTTTAGCCTCATGGGTCCTAAGCTTTATGTTAACACAAC ACCAGTTGATGTGGGGAAGAAGCCGGTTACTGGCCTTAGACTGTACTTAGAAGGTAAAAGAAGCAACTGCTTAGCGATTCACTTGCAGCACCTATCTTCA CTTCCGAAGACCTTCCAGCTTGCAGATGAACGAGGTGGCAACATTTCAGATTTCTCCTCTGACCGCAGATATTATGAGAAAGTGAAATGGAAGAGCTTCT CCCATATCTGCACAGCCCCTGTTGAGTCGGAAGATGATCTCTCGATTGTCACTGGGGCACAGTTTGAAGTTGGAGAGTCTGGTTTGAAAAAAGTTTTATT TTTGCGGCTCCAATTTTCTAGAGTCATTGGTACCACAACTCTGAGGAGGTCTGAATGGGATGGTTCGCCTGCCTTGAACCAGAAATCTGGAATAATGTCC ACATTGATCAGTACTCGTTTCTCAAGTGCTCAGAAACAACCTCCTCCACAACCAGTGGTAAACATAAACTCAGCCGTGTACCCAGGAGGCCCACCAGTCG CTGCCCAGACCCCTAAACTTTTGAAGTTTGTTGACACAACAGAGATGACAAGAGGACCGCAAGACGCACCTGGATACTGGGCCGTGTCTGGGGCAAAGCT TAATGTAGATAAGGGAAAAATCTCTCTTCGAGTCAAGTATTCTCTATTGCCTTTGGTTTTACCTGATGATGATGTATCAATAGAGATGTAA
AA sequence Show only first row Show all	>Potri.019G001000.1 pacid=42773699 polypeptide=Potri.019G001000.1.p locus=Potri.019G001000 ID=Potri.019G001000.1.v4.1 annot-version=v4.1 MRSAKKAAEEAIEAIGLGYDLGFDLRLKYCKKNSPRLIGINDDGKQVHNMVIPGGFSIPNVPKSIKCDKGERLRFSSDVLSFQQMSEQFNQELSLSGKIP SGHFNSAFEFSGVWQKDAANTKALAFDGVNITLYSIALDKSQVVLCDHVKEAVPSSWEPAALASFIEKYGTHVIVGIKMGGKDMICMKQQHSSPLPPVDV QKKLKDMADKMFVDGVRSTMNSDKFYDREKVLQLQGLPFMDQLPSSSYSQTEHIKFISKRKGGNKNLPHKEWCQTVQTEPDVISMSFVPITSLLSGINGS GFLTHAINLYIRYKPPLDELHQFLEFQLPRQWAPVFGELALGPDRKQQSNASLQFSLMGPKLYVNTTPVDVGKKPVTGLRLYLEGKRSNCLAIHLQHLSS LPKTFQLADERGGNISDFSSDRRYYEKVKWKSFSHICTAPVESEDDLSIVTGAQFEVGESGLKKVLFLRLQFSRVIGTTTLRRSEWDGSPALNQKSGIMS TLISTRFSSAQKQPPPQPVVNINSAVYPGGPPVAAQTPKLLKFVDTTEMTRGPQDAPGYWAVSGAKLNVDKGKISLRVKYSLLPLVLPDDDVSIEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24290			MAC/Perforin domain-containing...		Potri.019G001000 [exp]	0	1
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105000 [exp]	1.41	0.8344
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Potri.014G135900 [exp]	4.89	0.8180
AT5G52430			hydroxyproline-rich glycoprote...		Potri.001G102200 [exp]	4.89	0.7714
AT2G27580			A20/AN1-like zinc finger famil...		Potri.009G144100 [exp]	11.40	0.7637
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	13.74	0.7510
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.002G039100 [exp]	18.97	0.7518
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	23.06	0.7298
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Potri.008G070400 [exp]	23.36	0.7285
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Potri.010G089800 [exp]	23.62	0.7745
AT4G30790			unknown protein		Potri.018G103000 [exp]	27.29	0.7877

Compare expression of checked genes

Potri.019G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.