Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21120 432 / 1e-152 Protein of unknown function (DUF803) (.1) AT4G38730 419 / 1e-147 Protein of unknown function (DUF803) (.1) AT1G71900 409 / 2e-143 Protein of unknown function (DUF803) (.1) AT1G34470 404 / 7e-141 Protein of unknown function (DUF803) (.1) AT4G13800 387 / 1e-134 Protein of unknown function (DUF803) (.1) AT4G09640 381 / 1e-131 Protein of unknown function (DUF803) (.1) AT3G23870 370 / 3e-128 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305700 [exp] 635 / 0 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 416 / 6e-146 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 415 / 6e-146 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 412 / 2e-144 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 401 / 4e-140 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 384 / 1e-133 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 384 / 1e-133 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 384 / 1e-133 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.008G165600 [exp] 42 / 0.0003 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012716 [exp] 579 / 0 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 550 / 0 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 427 / 4e-150 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 395 / 1e-138 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 359 / 8e-124 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 351 / 3e-121 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 328 / 2e-111 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 322 / 4e-109 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 248 / 6e-81 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF05653 [poplar] [flax] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Potri.019G001100.2 pacid=42773229 polypeptide=Potri.019G001100.2.p locus=Potri.019G001100 ID=Potri.019G001100.2.v4.1 annot-version=v4.1 ATGTACTCAAGCAATTTAACAGGGTTTATACTGGCACTGGTTTCCAGTACCTTCATAGGGACCAGTTTTATAATCAAGAAGAAGGGTCTTAGGAAAGCTG GTGTTAGTGGTCCTCGAGCAAGTGTCGGAGGCTATGGTTATTTGCTGGAGCCACTATGGTGGATAGGCATGATTAGTATGATTGTTGGAGAAATTGCCAA TTTTGTAGCATACGTTTATGCTCCTGCTGTTCTAGTGACACCACTTGGTGCATTGAGTATCATTGTTAGTGCGGTATTAGCCCATTTCTTGTTGGGGGAA AAGCTGCAAAAAATGGGGGTGTTGGGTTGTCTTCTATGCATAGTCGGTTCTACTGTGATTGTGCTACATGCACCTGAAGAACGGTCCATCAATTCAGTTA AAGAAATCTGGGAATTAGCTATCCAGCCTGCATTTCTTTCATATACAGCCGCTGCGGCAGCTATAGCATTGGTGCTGATTTGGTATTTTTCTCCACGCTA TGGCCAAACCAACATTTTGGTCTATATAGGAATTTGCTCAGTAATTGGATCATTGACAGTTATGAGTATAAAAGCCATTGGCATTGCAATAAAATTAACG CTAGAGGGCACAAACCAAGCCAAATACTTCCAAACGTGGATTTTTGCAATGGTTGCAATTACTTGCATCATCACCCAATTAAATTATCTAAACATGGCCC TGGATACGTTCAACACAGCAATTGTTTCTCCCATCTATTATGCCGGGTTTACGTCTTTTACAATTCTTGCCAGTGCAATAATGTTCAAGGATTATTCTGG TCAGAGTGCAAGCAGCATTGCTTCGGAGCTTTGTGGGTTTGTTACTGTGTTATCTGGTACCTTTGTATTACATAGCACCAGAGAACCAGATCCACCAATC CTGACAGATCTTTATACACCATTGTCTCCAAAGGTATCATGGTACATCCAAAGCAGTGGAGAACATTGGAAACAGAAGGATGAAGATGGGCCATCTCCCA ATTTTATCACAATTCTCCAGCAAGACCATTTCAAGTGA
AA sequence Show only first row Show all	>Potri.019G001100.2 pacid=42773229 polypeptide=Potri.019G001100.2.p locus=Potri.019G001100 ID=Potri.019G001100.2.v4.1 annot-version=v4.1 MYSSNLTGFILALVSSTFIGTSFIIKKKGLRKAGVSGPRASVGGYGYLLEPLWWIGMISMIVGEIANFVAYVYAPAVLVTPLGALSIIVSAVLAHFLLGE KLQKMGVLGCLLCIVGSTVIVLHAPEERSINSVKEIWELAIQPAFLSYTAAAAAIALVLIWYFSPRYGQTNILVYIGICSVIGSLTVMSIKAIGIAIKLT LEGTNQAKYFQTWIFAMVAITCIITQLNYLNMALDTFNTAIVSPIYYAGFTSFTILASAIMFKDYSGQSASSIASELCGFVTVLSGTFVLHSTREPDPPI LTDLYTPLSPKVSWYIQSSGEHWKQKDEDGPSPNFITILQQDHFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21120			Protein of unknown function (D...		Potri.019G001100 [exp]	0	1
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.006G040500 [exp]	3.74	0.8050	CRK1.1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093500 [exp]	4.58	0.7781
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.015G078801 [exp]	5.19	0.7986
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.003G171000 [exp]	5.74	0.8101	AHK3.2,PHK4
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.012G142700 [exp]	9.79	0.7667
AT3G14840			Leucine-rich repeat transmembr...		Potri.003G026150 [exp]	11.31	0.7770
AT4G00290			Mechanosensitive ion channel p...		Potri.002G162100 [exp]	11.53	0.7612
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	13.11	0.7879
AT1G70570			anthranilate phosphoribosyltra...		Potri.010G044900 [exp]	23.06	0.7640
AT5G60050			BTB/POZ domain-containing prot...		Potri.001G233900 [exp]	24.81	0.6987

Compare expression of checked genes

Potri.019G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.