Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 236 / 4e-73 HXXXD-type acyl-transferase family protein (.1) AT1G24430 212 / 5e-64 HXXXD-type acyl-transferase family protein (.1) AT1G24420 207 / 4e-62 HXXXD-type acyl-transferase family protein (.1) AT4G15390 202 / 4e-60 HXXXD-type acyl-transferase family protein (.1) AT3G30280 191 / 9e-56 HXXXD-type acyl-transferase family protein (.1) AT5G47950 181 / 4e-52 HXXXD-type acyl-transferase family protein (.1) AT5G23970 178 / 4e-51 HXXXD-type acyl-transferase family protein (.1) AT5G47980 150 / 1e-40 HXXXD-type acyl-transferase family protein (.1) AT4G15400 142 / 7e-38 HXXXD-type acyl-transferase family protein (.1) AT5G63560 98 / 4e-22 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001400 [exp] 533 / 0 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.015G127000 [exp] 400 / 7e-137 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 385 / 5e-131 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 377 / 7e-128 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 315 / 7e-104 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 311 / 5e-102 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 299 / 1e-97 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) Potri.004G017600 [exp] 284 / 8e-92 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 248 / 2e-77 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 221 / 5e-67 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 218 / 4e-66 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 194 / 8e-57 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 192 / 3e-56 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 191 / 1e-55 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 190 / 3e-55 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 188 / 1e-54 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 185 / 3e-53 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 182 / 4e-52 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 179 / 5e-51 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G001200.1 pacid=42773779 polypeptide=Potri.019G001200.1.p locus=Potri.019G001200 ID=Potri.019G001200.1.v4.1 annot-version=v4.1 ATGAAAATTGAAATCACATCTAGAAAATGGATCACTCCATCATCTCCAACTCCACCCCACCTTCAAAGCTTGAAAATATCAAGTTTTGACCAGCATGGTC AGAATCATTACGTGCCTAGCTTCCACTTCTACCCGGCTAATGAAGAAGAATGTGGCGTAATCAGCAATGCAGAGAAAAGTTTGCGGTTACAGGAATCATT GTCTGAGGTCTTAACGCTATATTATCCATTCGCAGGAAGATATTCGAGTGATGAACCCTTAATTGAATGCAATGATAAGGGAGCCGAGTATTTGGAAGCC CAAGTAGCTGGCTCTCTCTCTCAGCTCCTCAGCGATGAAGAGCTCGAGACCCAGTTGCAGAATCACTTTGTTCCACCAATGTTCGATCCTATTAGTAGCC CTCCGCTAGTTGTTCAATTCAACAGGTTTGAGTGTGGTGGAATTGCTATAGGTGTATCTATGACACACAAGATGGTCGATGCATTCTCGGCATTTGGATT CATTACGGCATGGGCAACTGCGTGCCGAATAGGGATCGACAAGGCATGCCCTCCAAGTTTCGAATTGGGTTCCATTTTCCCACCAAGAGATGCATTTAGA ATCGAGAATTGGGAACGTAAAGCTACAGCTACAAATAAGATTGTCACAAAAAGGTTTGTGTTTGATGCTGTAGCAATATCAAATTTGAAAGCTGCTGTTA GTGCCAGCGCTAGAAATAACAGTTCAGAGTTGCCGAAACAACAAATCACAAGAGTAAAGGCTGTGGCGGCACTCATATGGGGGAGTTGTATTAGGGTGTC TCAAGCTGTACATGGCCGAATGAGACCTTCCATCATCAAATTTCCTATCAATCTGCGAGGAAAGACAAATCTTCCTATACCAGAGAACTCTTGTGGAAAC TTTGCAGGTTGGTCAGCTCCCCATTTTATGCCCAATGATGAGGGCGAGTTGAAAATTCACGAGTTAGTAAGTCGGATCCATGATGGCATTGAACAAACTC TCACAAATTACGCGAAAGCTTCAAGTTCTGATGAATTTTTTATCATGGTGATGAACGACTTTCGAAAGCTAGATGAAGCATTGAAGCAAACTGAACAACA AGATGTCTATTTGTTTTCTTGCTGGTGTCGGTTCCCTATGTATGAAGCAGATTTTGGTTGGGGAAAGCCCAGTTTGGTGAGTAGAGGTGTGCAGGCTCAC AAAGAGATGATTTTGCTTTTTGACACGAAAGATGGTAATGGAATTGACGCGTGGGTGAGCTTGGAAGAAAACAACATGCTTCTTTTTAAACAAGATCCTG ATCTTTTAGCTTTCACTACCTAA
AA sequence Show only first row Show all	>Potri.019G001200.1 pacid=42773779 polypeptide=Potri.019G001200.1.p locus=Potri.019G001200 ID=Potri.019G001200.1.v4.1 annot-version=v4.1 MKIEITSRKWITPSSPTPPHLQSLKISSFDQHGQNHYVPSFHFYPANEEECGVISNAEKSLRLQESLSEVLTLYYPFAGRYSSDEPLIECNDKGAEYLEA QVAGSLSQLLSDEELETQLQNHFVPPMFDPISSPPLVVQFNRFECGGIAIGVSMTHKMVDAFSAFGFITAWATACRIGIDKACPPSFELGSIFPPRDAFR IENWERKATATNKIVTKRFVFDAVAISNLKAAVSASARNNSSELPKQQITRVKAVAALIWGSCIRVSQAVHGRMRPSIIKFPINLRGKTNLPIPENSCGN FAGWSAPHFMPNDEGELKIHELVSRIHDGIEQTLTNYAKASSSDEFFIMVMNDFRKLDEALKQTEQQDVYLFSCWCRFPMYEADFGWGKPSLVSRGVQAH KEMILLFDTKDGNGIDAWVSLEENNMLLFKQDPDLLAFTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	0	1
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	1.00	0.9985
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	2.44	0.9975
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	4.12	0.9935
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Potri.004G019000 [exp]	5.47	0.9967
AT1G65450			HXXXD-type acyl-transferase fa...		Potri.010G180000 [exp]	6.24	0.9941
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116800 [exp]	6.63	0.9923
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	7.41	0.9959
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Potri.002G192400 [exp]	9.38	0.9853
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Potri.012G143600 [exp]	9.48	0.9959
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Potri.006G218000 [exp]	10.67	0.9930

Compare expression of checked genes

Potri.019G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.