Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) AT1G24430 214 / 8e-65 HXXXD-type acyl-transferase family protein (.1) AT1G24420 199 / 6e-59 HXXXD-type acyl-transferase family protein (.1) AT5G23970 171 / 1e-48 HXXXD-type acyl-transferase family protein (.1) AT3G30280 171 / 2e-48 HXXXD-type acyl-transferase family protein (.1) AT4G15390 168 / 3e-47 HXXXD-type acyl-transferase family protein (.1) AT5G47950 162 / 2e-45 HXXXD-type acyl-transferase family protein (.1) AT5G47980 141 / 2e-37 HXXXD-type acyl-transferase family protein (.1) AT4G15400 124 / 4e-31 HXXXD-type acyl-transferase family protein (.1) AT5G41040 109 / 6e-26 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001200 [exp] 531 / 0 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 407 / 8e-140 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.015G127000 [exp] 385 / 4e-131 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 358 / 1e-120 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 314 / 4e-103 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 306 / 3e-100 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 299 / 1e-97 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) Potri.004G017600 [exp] 296 / 2e-96 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1) Potri.006G034066 [exp] 251 / 4e-81 AT3G26040 163 / 2e-47 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 241 / 8e-75 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 234 / 3e-72 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 199 / 6e-59 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 199 / 8e-59 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 197 / 5e-58 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 195 / 2e-57 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 194 / 8e-57 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 187 / 2e-54 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 182 / 5e-51 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 178 / 5e-51 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G001400.1 pacid=42773921 polypeptide=Potri.019G001400.1.p locus=Potri.019G001400 ID=Potri.019G001400.1.v4.1 annot-version=v4.1 ATGGAAGTTCAAATCACATCTAGAAAATTGATAACTCCATCATCTCCGACTCCTCCCCACCTTCAAAACACGAGAGTGACATGTTTTGACCAGCTTGCTC CATTTTTTTACGTGCCTACAATCTTCTATTACCCTGTTGAGGGGGAAGAATATGCTGTCAAGAACGCAGAAAAAAGTTTGCTGTTACAAAAATCTTTGTC TGAAATCTTAACACTCTATCATCCATTCGCAGGAAGATATGCAAGAGATAATCTTTCAATCGAATGTAATGACAAGGGAGTAGAATATTTGGAAGCCAAA GTATACGGAAGCCTCTCTCAGTTTCTTCAGCGGACATCGCCGAATCACTTGGTTCAACAGAACTTTCATCCACACTACAGCTCTCCACTAGCAGTGCAAT TCAACGAGTTTGAATGTGGTGGAGTCGCTATAGGTATTTCAATGACACACAAGATAGGAGATGGATTCACCATGTTCACATTGATTAACAACTGGGCTAC TGCATGCCGAATAGGAGTCAATAAAGTTCATCCCCCAAGTTTCGAATTGGGTATCATTTTCCCACCACGAGAAGCATCTAGAGTTCAGAATGTGGTTCTA GGAAGAGCTCCGACTAATAAGATTGTCACAAAGAAGTTTGTGTTTGATGGTGAGGCAATATCAAATCTGAAAGTAGCTGCTAGTGCAAGCAGTTCACAGT TCAACAGACACCAACTGACGAGAGTAAAGGTTGTGACAGCACTTATTTGGAGTGCATTTATTAGGGTAGATCAAGCAAGGGATGGAAGAAGGAGACCTTC CATGTTGAAAGTTCCAGTGAATCTGCGAGGAAAGACAAATATAAAAATCCCAGAAAACTCTTGTGGGAACTTTATAAGTTGGGCAGTAACGCAATATCTG CCAAATGATGAGATAAAGATGCAACTTCATGAATTGGTAAGCAGGATCCATGATGCAATTGAGAAAACTGTCTCAAATTATGAGAAAGCATCAAATGGCG AAGACTTATTTTTTATGGTTAACGAAGACTTTCAGAAGGTAAGTCAAGCATTGAAGGAAAGTGAGGCAGATGTCTATATGTTTTCTTGCTGGAGCCGGTT CCCACTGTATGACGCAGATTTTGGTTGGGGAAAGCCTGCTTTGGCGAGTAGAAGTGTGCAGGTTGAGAGAGAGATGATTTTGCTTCTGGACACTAAAGAT GGCAAAGGAATTGAGGCAAGGGTGAGCTTGGAAGAAAACAAAATGCTTCTTTTCCTACAAGATCCATATATTCTAGCATTCAGTCACTACAAAAAAAGCA GACTATAA
AA sequence Show only first row Show all	>Potri.019G001400.1 pacid=42773921 polypeptide=Potri.019G001400.1.p locus=Potri.019G001400 ID=Potri.019G001400.1.v4.1 annot-version=v4.1 MEVQITSRKLITPSSPTPPHLQNTRVTCFDQLAPFFYVPTIFYYPVEGEEYAVKNAEKSLLLQKSLSEILTLYHPFAGRYARDNLSIECNDKGVEYLEAK VYGSLSQFLQRTSPNHLVQQNFHPHYSSPLAVQFNEFECGGVAIGISMTHKIGDGFTMFTLINNWATACRIGVNKVHPPSFELGIIFPPREASRVQNVVL GRAPTNKIVTKKFVFDGEAISNLKVAASASSSQFNRHQLTRVKVVTALIWSAFIRVDQARDGRRRPSMLKVPVNLRGKTNIKIPENSCGNFISWAVTQYL PNDEIKMQLHELVSRIHDAIEKTVSNYEKASNGEDLFFMVNEDFQKVSQALKESEADVYMFSCWSRFPLYDADFGWGKPALASRSVQVEREMILLLDTKD GKGIEARVSLEENKMLLFLQDPYILAFSHYKKSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001400 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	3.46	0.9651
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	7.61	0.9663
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004200 [exp]	12.12	0.9630
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.011G003900 [exp]	16.18	0.9131
AT5G39860	bHLH	BNQ1, BHLH136, ...	PACLOBUTRAZOL RESISTANCE1, BA...		Potri.017G081300 [exp]	16.49	0.9628
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Potri.004G021000 [exp]	18.86	0.8940
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	19.74	0.9611
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	19.87	0.9613
AT1G45688			unknown protein		Potri.003G052900 [exp]	20.73	0.8809
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.001G240300 [exp]	22.27	0.9603

Compare expression of checked genes

Potri.019G001400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.