Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63710 782 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G10290 587 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 582 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G71830 480 / 8e-163 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 456 / 7e-154 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G60800 447 / 7e-150 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 442 / 3e-148 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G13790 437 / 2e-146 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT5G16000 432 / 5e-144 NIK1 NSP-interacting kinase 1 (.1) AT2G13800 426 / 3e-142 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306000 [exp] 990 / 0 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G094500 [exp] 597 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G074200 [exp] 576 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.007G082400 [exp] 476 / 2e-161 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 468 / 3e-158 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.010G043200 [exp] 461 / 1e-155 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.013G117200 [exp] 455 / 3e-153 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.008G188800 [exp] 454 / 6e-153 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.003G023000 [exp] 453 / 1e-152 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000629 [exp] 588 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023146 [exp] 511 / 8e-178 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10020962 [exp] 461 / 1e-155 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10030591 [exp] 461 / 2e-155 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 459 / 7e-155 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 440 / 4e-147 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10006057 [exp] 430 / 3e-144 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10019145 [exp] 430 / 2e-143 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10028716 [exp] 429 / 2e-143 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10034413 [exp] 430 / 4e-143 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G001800.1 pacid=42773697 polypeptide=Potri.019G001800.1.p locus=Potri.019G001800 ID=Potri.019G001800.1.v4.1 annot-version=v4.1 ATGGCTAAAGACAATAGAGGACATCCAAGCGGCGGCAAGGCGTCTTCGACTGAATCTTTCTGCTACACCAAATACAGATACATGTTCGGAGTCTTTTCTC TCTGGAATCCCCTGAAGCTAGTTATCAACTGTCTTATTCTGCTCAATTTTTTGAAAATCACTATTTCAACCAAGGAACCTGACACTGAAGGTAATGCTTT AAGAGATCTTTTGCTGGCACTCAATGATTCAAATAGACAGATAAATTGGGATACAAATTTAGTGAGTCCTTGCTTTAGTTGGACTCATGTCATTTGCAGA AATGGACATGTTGAATCCCTGAGCCTGAATTCACTTGGATTTTCGGGAACTCTTTCACCTGCAATTATGAAACTGGAGTTTTTGGTTACCCTGGAATTGC AGAACAATAGTCTGTCAGGGCCCTTACCTGATTATCTTGGCAACATGGTGCATCTACAAAATCTAAATCTTGCCAGCAATAAATTCAGTGGCTCTATACC TACCACTTGGGGTCAGCTATCCAATTTGAAAAATTTGGATCTCTCATCTAACAATTTAACTGGAAGAATACCAGGGAAACTCTTTTCTGTTGCAATGTTC AATTTTACAGCTACTCATCTTGCTTGTGGCCTGAGCTTGGAAGAACCTTGCATCTCGGGGTCTCCTCTTCGAGTTTCAACCAGCAAGTCAAGACTCAAAG TAATTGCAACTTCTGCCAGCTGTGGTGCTTTCATTCTTCTGATACTCGTGGCTGTTCTGGCATACCGATATCATCAATTTCACAAAGAGAAAAATGATAT CTTTGTTGATGTTGCTGGTGAAGACGACCGCAAAATTACATTTGGGCAGCTTCGGAGATTTTCTTGGCGTGAGCTTCAGCTTGCAACAGACAATTTCAGT GAAAGCAACATAATTGGTCAAGGAGGGTGTGGAAAAGTTTACAAAGGTATCCTCTCAGACAACATGAAGGTTGCTGTGAAACGACTTGCAGATTATTACA GTCCTGGTGGAGAGGCTGCATTTCAGAGAGAAGTTCAACTTATCAGTGTTGCTTTTCATAAGAATCTTCTAAAGTTGGTTGGATTCTGTACAACTTCATC TGAGAGAATCCTGGTCTATCCATACATGCAAAATCTTAGCGTTGCATACCGCTTGAGAGAATTAAAGCCTGGTGAGAAAGGCTTGGACTGGCCAACAAGG AAAAAAATTGCCTTTGGTGCAGCGCACGGATTGGAGTATCTACATGAGCATTGTAATCCTAAGATTATACATCGCGATCTAAAGGCTGCGAACATCCTGT TAGATGACAATTTTGAAGCCGTTCTAGGAGATTTCGGGCTAGCAAAACTAGTTGACACGAAATTCACTCATGTTACTACTCAGGTGCGTGGTACCATGGG TCACATTGCCCCAGAATACCTATCTACTGGAAAATCATCAGAAAAGACAGATGTGTTCGGATATGGCATTACACTTCTTGAACTGGTAACCGGTCAGCGT GCAATAGACCTTTCTCGACTCGAGGAGGAAGAGGAAGTTCTTCTGCTTGACCATATCAAGAAGTTGTTGAGGGAAAACAGGCTTGATGACATCGTGGATG GAAATTTGAAAACTTACGACCGCAAAGAAGTCGAGACTATAGTCCAGGTTGCATTGCTATGCACAAATAGCTCACCTGAAGGCCGCCCCAAAATGGAAGA AGTGGTGAAAATGCTGCGAGGCATTGGCCTGGCCGAGAGATGGGCAAAGTGGGAGCAGCTTGAGGATGCTATGAACCAAGACTTGGCAGTACTCATGTCT CAACAATATATCTGGGCCGAAGATTCAAGTATTGACCAAGAAGCTATACAATTGTCCAGGGCAAGATAG
AA sequence Show only first row Show all	>Potri.019G001800.1 pacid=42773697 polypeptide=Potri.019G001800.1.p locus=Potri.019G001800 ID=Potri.019G001800.1.v4.1 annot-version=v4.1 MAKDNRGHPSGGKASSTESFCYTKYRYMFGVFSLWNPLKLVINCLILLNFLKITISTKEPDTEGNALRDLLLALNDSNRQINWDTNLVSPCFSWTHVICR NGHVESLSLNSLGFSGTLSPAIMKLEFLVTLELQNNSLSGPLPDYLGNMVHLQNLNLASNKFSGSIPTTWGQLSNLKNLDLSSNNLTGRIPGKLFSVAMF NFTATHLACGLSLEEPCISGSPLRVSTSKSRLKVIATSASCGAFILLILVAVLAYRYHQFHKEKNDIFVDVAGEDDRKITFGQLRRFSWRELQLATDNFS ESNIIGQGGCGKVYKGILSDNMKVAVKRLADYYSPGGEAAFQREVQLISVAFHKNLLKLVGFCTTSSERILVYPYMQNLSVAYRLRELKPGEKGLDWPTR KKIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDNFEAVLGDFGLAKLVDTKFTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQR AIDLSRLEEEEEVLLLDHIKKLLRENRLDDIVDGNLKTYDRKEVETIVQVALLCTNSSPEGRPKMEEVVKMLRGIGLAERWAKWEQLEDAMNQDLAVLMS QQYIWAEDSSIDQEAIQLSRAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	3.00	0.9261	CLV1.2
AT5G27370			Protein of unknown function (D...		Potri.013G027200 [exp]	4.00	0.9230
AT5G19670			Exostosin family protein (.1)		Potri.018G085500 [exp]	9.38	0.8891
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G135000 [exp]	10.95	0.8978
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.009G113045 [exp]	12.24	0.8585
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	12.84	0.9019
AT1G65810			P-loop containing nucleoside t...		Potri.008G142960 [exp]	15.16	0.9087
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	16.30	0.9051
AT2G47750		GH3.9	putative indole-3-acetic acid-...		Potri.002G206400 [exp]	18.33	0.8881	GH3-9
					Potri.010G132101 [exp]	21.00	0.8909

Compare expression of checked genes

Potri.019G001800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.