Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13340 94 / 1e-22 unknown protein AT1G10890 58 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306100 [exp] 162 / 3e-48 ND / Potri.001G211000 [exp] 89 / 2e-20 AT1G10890 76 / 8e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035960 [exp] 120 / 2e-32 AT5G13340 152 / 5e-45 unknown protein Lus10025702 [exp] 112 / 1e-27 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10043141 [exp] 86 / 9e-20 AT1G10890 143 / 5e-42 unknown protein Lus10032609 [exp] 66 / 7e-12 AT1G04610 248 / 7e-75 YUCCA 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15346 [poplar] [flax] ARGLU Arginine and glutamate-rich 1
Representative CDS sequence Show only first row Show all	>Potri.019G001900.1 pacid=42773439 polypeptide=Potri.019G001900.1.p locus=Potri.019G001900 ID=Potri.019G001900.1.v4.1 annot-version=v4.1 ATGGCTAGAAGCATATCTCGCTCGCCGTCGCACCGGCGGAGGCGCTCACCGTCGCCGGCAGACCGCCCCCAAAGAAGAAGAAGCAGAAGGGCTGACCGCA TCCGCTCTTCTTATTCCAATTCTCACTCCAGGAGGAAAAGTGATTCTGATTCTCCACCCCCTCGGCGCCATCAGAGAAGTCGTTCACCGAGTTACAGGAG GCGTAAAAGTCGGTCTCCGACACCTTCTAGGCGACGTAGAAGACATAGAAGTAGAAGTAGGACTGAATCATTGTCTCCATTGTCTAGGTCAAGAAGTACA AGTATTGCTTCTACCAAAATTGCTGTTGAGAAATTAAAGAAAGAGGAGGAAGAGAAGAAGAGGCGTCAACTAGAGGCTGAACTAAACCTATTAGAGGAAG AGACTACTAGGAGACTGGAGGAATCCATTCGGAAAAATGTGGAAGAGAAATTAAATTCTGAGGAAGTCCAGTCAGAAATAGAGAGGCGGATAGAAGAAGG TCAGAAGAAATTGTTTGATGATGTTGTAGCTCAACTGCTTAAGGAAAAGGAAGCTGCTCTTGTTGAGGAAAGAAGGAAAGAAGCACAAGCTCGAAAAGAA AGAGAAGAGCTGGATAAGATGCTGAAAGAGAATAGTAGGAGGGTGGAAGAGTCACAGAGAAGAGAAGCCTTGGAGCAACAAAGGAAAGATGAGGAACGAT TTTGTGAGCTAGAGCTGATTAAAAGACAAAAGGAAGAGGTTGCTTGGAGGAAAAAGCTGGAAGTGGAAGAAGATCATACAAACCAGATGAAACTGTCGGG TAAGAATAAATCTCGACAGAGTCGACCTTTTGGAATTGGTTGA
AA sequence Show only first row Show all	>Potri.019G001900.1 pacid=42773439 polypeptide=Potri.019G001900.1.p locus=Potri.019G001900 ID=Potri.019G001900.1.v4.1 annot-version=v4.1 MARSISRSPSHRRRRSPSPADRPQRRRSRRADRIRSSYSNSHSRRKSDSDSPPPRRHQRSRSPSYRRRKSRSPTPSRRRRRHRSRSRTESLSPLSRSRST SIASTKIAVEKLKKEEEEKKRRQLEAELNLLEEETTRRLEESIRKNVEEKLNSEEVQSEIERRIEEGQKKLFDDVVAQLLKEKEAALVEERRKEAQARKE REELDKMLKENSRRVEESQRREALEQQRKDEERFCELELIKRQKEEVAWRKKLEVEEDHTNQMKLSGKNKSRQSRPFGIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13340			unknown protein		Potri.019G001900 [exp]	0	1
AT1G24560			unknown protein		Potri.008G184600 [exp]	2.00	0.8721
AT1G75510			Transcription initiation facto...		Potri.002G028900 [exp]	4.89	0.8475
AT1G73350			unknown protein		Potri.004G066700 [exp]	5.29	0.8134
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.005G256500 [exp]	6.32	0.8265
AT2G21290			unknown protein		Potri.004G163100 [exp]	9.16	0.8308
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.016G001000 [exp]	9.79	0.8103
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.001G372500 [exp]	13.41	0.8133
AT1G33970			P-loop containing nucleoside t...		Potri.019G077300 [exp]	13.56	0.7993
AT3G01435			Expressed protein (.1)		Potri.004G001600 [exp]	15.87	0.8061
					Potri.001G087701 [exp]	17.02	0.7191

Compare expression of checked genes

Potri.019G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.