Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03200 529 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G33340 219 / 1e-66 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G25510 219 / 4e-66 Eukaryotic aspartyl protease family protein (.1) AT1G01300 215 / 1e-64 Eukaryotic aspartyl protease family protein (.1) AT2G35615 214 / 2e-64 Eukaryotic aspartyl protease family protein (.1) AT3G18490 213 / 1e-63 Eukaryotic aspartyl protease family protein (.1) AT3G61820 211 / 5e-63 Eukaryotic aspartyl protease family protein (.1) AT3G20015 202 / 8e-60 Eukaryotic aspartyl protease family protein (.1) AT1G31450 201 / 2e-59 Eukaryotic aspartyl protease family protein (.1) AT1G64830 196 / 9e-58 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306200 [exp] 757 / 0 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 265 / 5e-84 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 231 / 5e-71 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 232 / 9e-71 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 229 / 1e-69 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 225 / 4e-68 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 222 / 4e-67 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 219 / 6e-66 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 216 / 7e-65 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035961 [exp] 513 / 0 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 515 / 2e-178 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 250 / 5e-78 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 248 / 9e-78 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 245 / 3e-76 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 244 / 5e-76 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 241 / 8e-75 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002610 [exp] 239 / 8e-74 AT5G33340 392 / 2e-133 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 238 / 1e-73 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 235 / 2e-72 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.019G002100.1 pacid=42773949 polypeptide=Potri.019G002100.1.p locus=Potri.019G002100 ID=Potri.019G002100.1.v4.1 annot-version=v4.1 ATGGCTAATATGTCTTCTTTGTCTTTAGTCGTAGCACTGGCAATTTTCGCCTTTGTTTTTTCTCATGCATTTTCTACATCACGGCGAGTTTTAGAGCATC CAAAGGTGCAAAATGGCTTCCGAGCGAAGCTCAAACATGTTGATTCGGGTAAGAACTTAACGAAATTTGAGCGTATTCAACACGGGGTTAAGCGTGGAAG ACACAGGTTGCAAAGATTCAAAGCAATGGCACTGGTAGCATCTTCTAATTCTGAGATTGATGCCCCAGTTCTTCCCGGGAATGGTGAGTTCTTGATGAAG CTAGCTATTGGCACGCCACCGGAGACTTATTCTGCAATAATGGACACAGGTAGCGATTTGATATGGACTCAGTGCAAGCCTTGCACACAGTGTTTTGATC AACCCACTCCTATTTTCGATCCAAAAAAGTCCTCTTCTTTCTCTAAGTTATCATGTTCTAGCAAATTATGTGAAGCATTACCCCAGTCCACTTGCAGCGA TGGCTGCGAATATCTGTATGGTTATGGCGATTATTCTTCAACACAAGGAATGCTGGCAAGCGAAACTCTCACGTTTGGCAAGGTTTCAGTTCCTGAAGTT GCATTCGGTTGCGGAGAAGATAACGAGGGAAGTGGATTCAGCCAGGGTTCTGGCCTAGTGGGGCTTGGCCGTGGACCCTTGTCATTGGTTTCTCAACTCA AGGAGCCCAAGTTCTCATATTGCTTAACCTCTGTTGATGACACAAAAGCCAGCACACTATTGATGGGATCTCTAGCAAGTGTGAAAGCATCAGACAGTGA AATCAAGACCACCCCTTTAATCCAGAACTCAGCACAGCCATCATTTTACTATCTTTCCCTTGAAGGAATATCAGTGGGTGACACTAGTTTACCTATCAAG AAATCTACCTTTTCACTCCAAGAAGATGGAAGTGGTGGCCTTATTATTGACTCTGGCACTACAATAACCTATTTAGAACAAAGTGCTTTTGATTTGGTAG CCAAAGAGTTCACCTCTCAGATTAATCTCCCGGTGGACAATTCCGGCTCGACTGGGCTCGAAGTTTGCTTCACATTGCCATCAGGCTCGACCGATATAGA GGTGCCTAAGTTGGTATTCCACTTTGATGGAGCAGACTTGGAATTGCCAGCCGAAAACTATATGATTGCCGATGCAAGCATGGGAGTAGCTTGCTTGGCC ATGGGGAGCTCAAGTGGCATGTCTATTTTCGGCAATATTCAGCAACAGAACATGTTAGTGCTCCATGATCTTGAGAAGGAAACCTTGTCATTCCTTCCAA CACAGTGTGATGAACTATGA
AA sequence Show only first row Show all	>Potri.019G002100.1 pacid=42773949 polypeptide=Potri.019G002100.1.p locus=Potri.019G002100 ID=Potri.019G002100.1.v4.1 annot-version=v4.1 MANMSSLSLVVALAIFAFVFSHAFSTSRRVLEHPKVQNGFRAKLKHVDSGKNLTKFERIQHGVKRGRHRLQRFKAMALVASSNSEIDAPVLPGNGEFLMK LAIGTPPETYSAIMDTGSDLIWTQCKPCTQCFDQPTPIFDPKKSSSFSKLSCSSKLCEALPQSTCSDGCEYLYGYGDYSSTQGMLASETLTFGKVSVPEV AFGCGEDNEGSGFSQGSGLVGLGRGPLSLVSQLKEPKFSYCLTSVDDTKASTLLMGSLASVKASDSEIKTTPLIQNSAQPSFYYLSLEGISVGDTSLPIK KSTFSLQEDGSGGLIIDSGTTITYLEQSAFDLVAKEFTSQINLPVDNSGSTGLEVCFTLPSGSTDIEVPKLVFHFDGADLELPAENYMIADASMGVACLA MGSSSGMSIFGNIQQQNMLVLHDLEKETLSFLPTQCDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03200			Eukaryotic aspartyl protease f...		Potri.019G002100 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	1.00	0.9665
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	2.00	0.9617	CAM1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	4.47	0.9478
AT1G63300			Myosin heavy chain-related pro...		Potri.003G124600 [exp]	4.69	0.9387
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.001G320800 [exp]	6.32	0.9405	PtrFLA14-8,FLA14.8
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	6.70	0.9482
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	6.70	0.9394
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	7.07	0.9450
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	7.34	0.9445
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	8.77	0.9434

Compare expression of checked genes

Potri.019G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.