Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 479 / 1e-167 HXXXD-type acyl-transferase family protein (.1) AT3G03480 440 / 2e-152 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 248 / 2e-77 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 246 / 9e-77 HXXXD-type acyl-transferase family protein (.1) AT3G48720 242 / 2e-75 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 207 / 8e-62 HXXXD-type acyl-transferase family protein (.1) AT1G03390 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) AT2G19070 197 / 8e-58 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G57840 182 / 2e-52 HXXXD-type acyl-transferase family protein (.1) AT3G62160 178 / 7e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003000 [exp] 899 / 0 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 634 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 619 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 593 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 577 / 0 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 505 / 8e-178 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 489 / 3e-171 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 473 / 5e-165 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 466 / 2e-162 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 560 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 473 / 6e-166 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 461 / 5e-160 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 455 / 1e-157 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 451 / 1e-156 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 426 / 2e-146 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 369 / 1e-126 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 300 / 7e-100 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 268 / 3e-85 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10001027 [exp] 264 / 3e-85 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G002900.1 pacid=42774323 polypeptide=Potri.019G002900.1.p locus=Potri.019G002900 ID=Potri.019G002900.1.v4.1 annot-version=v4.1 ATGGCAACACCACCCACCCCACTAGTGTTCAAGGTGTCTAGACGGGAACCAGTTCTGATCACCCCTTCTGAGCCAACCCCACATGAACTCAAACCTCTTT CAGACATAGATGATCAAGATGGTCTCAGAGTCCAAATTCCACTCATTTATTTTTACCCTTACGATCCTTCAATGCAGAGGAGGGATCCTGTTGAGGTCAT TAAGGAAGCACTTGCTAAAACACTGGTGTTTTACTATCCATTTGCTGGTAGGCTTAGAGAAGGGCCTAAGCGTAAGCTCTTAGTGGAGTGTACAGGTGAG GGTATTTTGTTTATTGAGGCTGATGCCGATGTTACGCTTGAGCAGTTTGGTAATGCGCTCTATCCTCCAATTCCTTGCCTGGAGGAGCTCCTCTTTGACG TGCCTGGCTCCAGCGGGATGATAAACTGCCCTCTGCTGCTTATTCAGGTGACGCGTCTCAAGTGCGGCGGAATTGTCTTTGCCATCCGTCTGAACCACAC CATGAGTGACGGTACTGGCCTAAACCAATTTTTGTCAGCCATGTGTGAGATGGTGCATGGAGCACAGACTCCCTCTATCCAACCAGTTTGGGAAAGGGAC GTTTTAAATGCAAGGAACCCACCTCAGGTAACCTGCTTACACCACGAGTATGATCAACTGGTTGATGACACCACTGACAACGTTCCGCTTACTAAGAAGA CCCATCGTTCATTCTTTTTTGGAGCTGCTAACATATCTGCTATTCGTGGCTTTGCCCCACTACACCTTCGCCATTGCTCCACATTTGATGTATTGACTGC GTTTTTGTGGAGGTGCCGAACCATTGCACTTCAACCAAACCCAAATGATGAGATGCGGATACTATGCATTGTCAATGCTCGCAATAGATTTAACCCTCCG TTACCTAGAGGTTATTATGGAAACTGCATAGCATACTCAGTGGCAATGGCAACAGCGGGAGAAATCTCACGAAATTCTTTAGGCTTTACGTTGGAATTAG TCAGGAAGGCCAAGGCCAATGTGACTGAAGAGTACATGCGATCAGTGGCTGATCTGTTGGTGATTAAAGGTAGACCTTGGTACACAATGGTGCGGTCTTA CCTAGTGTCGGATGTGACTCGTGCAATGTTTGCAGAGATGAACTTAGGTTGGGGTAAGCCGAAGTATGCCGGGCCTGCTAAGGGTAATGTGGCAAGCTTT CAGATACCATATAGGACTAAGAAAGGAGAAGATGGTGTTCTTATGACCCTTTGCTTACCGACTCCGGCTATGGAAAGATTTGTGAAGGAGCTGGATAGCA CGTTTAAGGAGCAGTCAAATGGTGGTGGCAATGCTAAATCCCCCTTATCTTCCTTGTAG
AA sequence Show only first row Show all	>Potri.019G002900.1 pacid=42774323 polypeptide=Potri.019G002900.1.p locus=Potri.019G002900 ID=Potri.019G002900.1.v4.1 annot-version=v4.1 MATPPTPLVFKVSRREPVLITPSEPTPHELKPLSDIDDQDGLRVQIPLIYFYPYDPSMQRRDPVEVIKEALAKTLVFYYPFAGRLREGPKRKLLVECTGE GILFIEADADVTLEQFGNALYPPIPCLEELLFDVPGSSGMINCPLLLIQVTRLKCGGIVFAIRLNHTMSDGTGLNQFLSAMCEMVHGAQTPSIQPVWERD VLNARNPPQVTCLHHEYDQLVDDTTDNVPLTKKTHRSFFFGAANISAIRGFAPLHLRHCSTFDVLTAFLWRCRTIALQPNPNDEMRILCIVNARNRFNPP LPRGYYGNCIAYSVAMATAGEISRNSLGFTLELVRKAKANVTEEYMRSVADLLVIKGRPWYTMVRSYLVSDVTRAMFAEMNLGWGKPKYAGPAKGNVASF QIPYRTKKGEDGVLMTLCLPTPAMERFVKELDSTFKEQSNGGGNAKSPLSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G002900 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437000 [exp]	1.73	0.9730
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	4.00	0.9676
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	4.89	0.9690
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G048200 [exp]	5.47	0.9656
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	6.00	0.9570
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G099100 [exp]	6.32	0.9573
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007000 [exp]	7.48	0.9515	IFS1.39
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	7.74	0.9514
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	8.36	0.9563
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G142800 [exp]	9.16	0.9618

Compare expression of checked genes

Potri.019G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.