Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) AT3G03480 436 / 1e-150 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 247 / 5e-77 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 246 / 7e-77 HXXXD-type acyl-transferase family protein (.1) AT3G48720 245 / 1e-76 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 213 / 3e-64 HXXXD-type acyl-transferase family protein (.1) AT1G03390 206 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT2G19070 200 / 4e-59 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G57840 178 / 1e-50 HXXXD-type acyl-transferase family protein (.1) AT1G65450 170 / 9e-48 HXXXD-type acyl-transferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002900 [exp] 899 / 0 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 630 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 621 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 592 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 573 / 0 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 505 / 7e-178 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 479 / 2e-167 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 473 / 5e-165 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.001G127400 [exp] 463 / 2e-161 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 556 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 469 / 4e-164 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 459 / 2e-159 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 451 / 3e-156 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 446 / 1e-154 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 430 / 5e-148 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 364 / 1e-124 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 302 / 1e-100 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 269 / 1e-85 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 268 / 2e-85 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G003000.1 pacid=42774454 polypeptide=Potri.019G003000.1.p locus=Potri.019G003000 ID=Potri.019G003000.1.v4.1 annot-version=v4.1 ATGGCAACACCACCCACCCCACTAGTGTTCAAGGTGTCTAGACGGGAACCAGTTCTGATCACCCCTTCTGAGCCAACCCCACATGAACTCAAACCTCTTT CAGACATAGATGACCAAGATGGTCTCAGAGTCCACATTCCACTCATTCTTTTTTACCCTTACGATCATTCAATGCAGAGGAGGGATCCTGTTCAGGTCAT TAAGGAAGCACTTGCTAAAACACTGGTGTTTTACTATCCATTTGCTGGTAGGCTCAGAGAAGGGCCTAAGCGTAAGCTCTTGGTGGAGTGTACAGGTGAG GGTATTTTGTTTATTGAGGCTAATGCCGATGTTACGCTTGAGCAGTTTGGTGATGCGCTCTGGCCTCCAATTCCTTGCCTGGAGGAGCTCCTCTTTGACG TGCCTGGCTCCAGCGGGATGATAAACTGCCCTCTGCTGCTTATTCAGGTGACGCGTCTCAAGTGCGGCGGAATTGTCTTTGCCATCCGTCTGAACCACAC AATGAGTGACGGTACTGGCATAAACCAATTTTTGTCAGCCATGTGTGAGATGGTGCATGGAGCACAGACTCCCTCTATCCAACCAGTTTGGGAAAGGCAC GTTTTAAATGCAAGGAACCCACCTCAGGTAACCTGCTTACACCACGAGTATGATCAACTGGTTGACACCACTGACAACGTTCCGCTTACTAAGAAGACCC ATCGTTCGTTCTTTTTTGGACATGCTCACATATCTGCTATTCGTGGCTTTGCCCCACTACACCTTCGCCATTGCTCCACATTTGATGTATTGACTGCTTT TTTGTGGAGGTGCCGAACCATTGCACTTCAACCAAACCCAAATGATCAGATGCGGATACTATGCACTGTCAATGCTCGCAATAGATTTAACCCTCCGTTA CCTAGAGGTTATTATGGAAATTGCATGGCATACTCAGTGGCAATGGCAACAGCGGGAGAAATCTCACGAAATTCTTTAGGCTTTACGTTGGAATTAGTCA GGAAGGCCAAGGCCAATGTGACTGAAGAGTACATGCGATCAGTGGCTGATCTGTTGGTGATTAAAGGTAGACCTTGGTACACAATGGTGCGGTCTTACCT AGTGTCGGATGTGACTCGTGCAATGTTTGCAGAGATGAACTTAGGTTGGGGTAAGCCGAAGTACGCCGGGCCTGCTAAGGGTAATGTGGCAAGCTTTCAG ATACCATATAGGACTAAGAAAGGAGAAGATGGTGTTCTTGTGACTCTTTGCTTACCGACTCCGGCTATGGAAAGATTTGCGAAGGAGCTGGATAGCACGT TTAAGGAGCAGTCAAATGGTGGTGGCAATGCTAAATCCCTCTTATCTTCCTTGTAG
AA sequence Show only first row Show all	>Potri.019G003000.1 pacid=42774454 polypeptide=Potri.019G003000.1.p locus=Potri.019G003000 ID=Potri.019G003000.1.v4.1 annot-version=v4.1 MATPPTPLVFKVSRREPVLITPSEPTPHELKPLSDIDDQDGLRVHIPLILFYPYDHSMQRRDPVQVIKEALAKTLVFYYPFAGRLREGPKRKLLVECTGE GILFIEANADVTLEQFGDALWPPIPCLEELLFDVPGSSGMINCPLLLIQVTRLKCGGIVFAIRLNHTMSDGTGINQFLSAMCEMVHGAQTPSIQPVWERH VLNARNPPQVTCLHHEYDQLVDTTDNVPLTKKTHRSFFFGHAHISAIRGFAPLHLRHCSTFDVLTAFLWRCRTIALQPNPNDQMRILCTVNARNRFNPPL PRGYYGNCMAYSVAMATAGEISRNSLGFTLELVRKAKANVTEEYMRSVADLLVIKGRPWYTMVRSYLVSDVTRAMFAEMNLGWGKPKYAGPAKGNVASFQ IPYRTKKGEDGVLVTLCLPTPAMERFAKELDSTFKEQSNGGGNAKSLLSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G003000 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Potri.011G127900 [exp]	1.00	0.8914
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191200 [exp]	15.19	0.8519
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	29.39	0.8347
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Potri.013G128800 [exp]	32.86	0.8492
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.001G470200 [exp]	34.08	0.8420
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	42.08	0.8023
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003600 [exp]	51.86	0.8339
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	72.82	0.7929
AT3G19430			late embryogenesis abundant pr...		Potri.009G145700 [exp]	79.37	0.8186
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	86.35	0.8188

Compare expression of checked genes

Potri.019G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.