Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23660 1181 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 1179 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G14160 1158 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT2G21630 800 / 0 Sec23/Sec24 protein transport family protein (.1) AT5G43670 604 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G01810 99 / 4e-21 Sec23/Sec24 protein transport family protein (.1) AT3G07100 45 / 0.0003 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307400 [exp] 1376 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 951 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 632 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 625 / 0 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 613 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 120 / 6e-28 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 120 / 8e-28 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041256 [exp] 1246 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 1246 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 931 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 918 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 621 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 504 / 1e-169 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 451 / 7e-149 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 437 / 5e-148 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 126 / 1e-29 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 122 / 2e-28 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain CL0128 [poplar] [flax] PF08033 [poplar] [flax] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.019G003100.1 pacid=42773498 polypeptide=Potri.019G003100.1.p locus=Potri.019G003100 ID=Potri.019G003100.1.v4.1 annot-version=v4.1 ATGTCAGAAATCCCAAACGCAGATCCAGAAGGCATTGATTCAGTCCGTATGACATGGAACAACTGGCCCAGAACCAAAGTCGAAGCTTCCAAATGCGTCA TCCCTTTAGCCGCATCAATCTCCCCTATTCGTTCTAACCCAGAAATCCCAACTCTCCCTTACCTTCCTCTCCGTTGCAAAACCTGCACATCCATCATGAA TTGCTTCTCGCGCGTTGATTTCACCGCCAAGATCTGGATCTGCCCTTTCTGCTTCCAGCGCAACCATTTTCCTCCACACTATTCCATGATCTCGGAGACC AATCTCCCTGCTGAGTTGTACAGCCAGTATACGACAATAGAGTATACTATTGGTGACAAGAATCATAATCCAGTTGGGGAATTTGATGTTGAGTCGGCGT TTGTGTTTGTTTTGGATACTTGTATGATCGAGGAGGAGTTTGAGTATGTCAAATCGGAGGTTAAGAGGGCAATTGGGTTGTTGCCGGAGAATGCAATGGT GGGTTTTGTGACTTTTGGGACACAAGTGCAAGTTCATGAATTGGGGTTTAGTGATATGTCCAAAGTATATGTTTTTAGAGGGACTAAAGAGATTAGTAAA GATCAGATTATGGAGCAGTTAGGTATTGGTGGTGCTGGCAGGAGGAATGTTCCTGGTGGTGCTGTTGGTGTTGGTGGGTATCAGCAGCAGAGGGGGATGC CAATGCAGAATTCGGGTGTGAGCCGGTTTTTGTTGCCAGCTTCTGACTGTGAATTTACGCTCAATTCGCTCTTGGATGAGTTGCAAACAGATCAGTGGCC GGTGGCACCAGGAAATCGGCCTTCAAGATGTACTGGAGTAGCATTGAGTGTTGCAGCTGGATTGCTGGGAGCTTGTTTGCCTGGGACCGGAGCTAGAATT GTAGCTTTAGTTGGTGGTCCTTGCACCGAAGGGCCAGGAGCGATTATATCAAAAGATCTGTCTGATCCTGTACGTTCCCACAAGGATCTTGATAAGGATG CAGCACCATATTTCAAGAAAGCAGTCAAATTTTATGATAGTCTTGCAAAGCAGCTTGTCAGCCAGGGTCATGTTTTGGACCTTTTTGCCTCTGCTCTAGA TCAGGTTGGGGTTGCAGAAATGAAAGTTGCAGTAGAAAGAACTGGTGGTCTTGTTGTTCTCTCAGAAAGTTTCGGACATTCTGTATTTAAGGACTCCTTT AAGCGTGTATTTGATTCAGGAGAAAAGTCTCTTGGCCTCTGTTTCAATGGAACACTCGAGATTAACTGTTCAAAGGACATCAAAATTCAGGGGATTATTG GACCTTGCACCTCTTTGGAGAAGAAAGGACCTAGTGTTGCTGATACAGTCATTGGTGAGGGGAATACAACAGCTTGGAAGATGTGTGGCCTTGACAAGAG TAGTTGTTTTACTGTCTTCTTTGATATTTCATCAAGTGAAAAATCAAATGCTCCTGGAAGTGCAAATCCACAGCTATACTTACAGTTTCTTACAAGTTAT CAAAATCCTGAGGGTTTGACATTGCTTCGGGTTACAACTGTCACTAGAAGATGGGTAGATAGTGCTGTTAACTCAGAGGAATTAGTACAAGGTTTTGACC AAGAGACCGCAGCTGTGGTAATGGCGAGATTCACATCCCTGAAAATGGAGTCAGAGGAAGGATTTGATGCCACTAGGTGGCTAGACCGAAATCTCATCCG CTTCTGTTCCAAATTTGGTGAATACCGGAAGGATGATCCGTCATCTTTTACATTGAACTCATTTTTCTCTTTCTTCCCTCAGTTTATGTTTAATCTGCGA AGATCACAATTTGTACAGGTTTTCAATAACAGCCCAGATGAGACAGCTTATTTCCGCATGTTGTTGAACCGTGAAAACATTACCAATGCTGCTGTCATGA TTCAACCATCGCTAATATCATATTCATTTAACTCACTGCCTCAACCTGCATTATTGGATGTCGCTTCTATTGGAGCTGATCGTATTCTCTTACTGGATTC ATACTTTAGTGTTGTCGTATTTCATGGAATGACAATAGCTCAATGGCGTAACTTGGGTTACCAGAATCAGCCAGAGCACCAGGTGTTTGCACAGCTATTG CAAGCACCCAAAGACGATGCCCAAGCGATCATTCATGAACGTTTTCCCGTTCCTAGATTGGTCGTGTGTGATCAGCATGGATCCCAGGCAAGGTTCTTAT TGGCAAAGTTGAACCCATCAGCTACATACAATAATGCCAATGAGATGGCTGCTGGGTCAGATATAATATTCACGGATGATGTGAGCCTTCAAGTTTTCTT CGAGCATCTTCAGAGGTTAGCTGTGCAGTCTTGA
AA sequence Show only first row Show all	>Potri.019G003100.1 pacid=42773498 polypeptide=Potri.019G003100.1.p locus=Potri.019G003100 ID=Potri.019G003100.1.v4.1 annot-version=v4.1 MSEIPNADPEGIDSVRMTWNNWPRTKVEASKCVIPLAASISPIRSNPEIPTLPYLPLRCKTCTSIMNCFSRVDFTAKIWICPFCFQRNHFPPHYSMISET NLPAELYSQYTTIEYTIGDKNHNPVGEFDVESAFVFVLDTCMIEEEFEYVKSEVKRAIGLLPENAMVGFVTFGTQVQVHELGFSDMSKVYVFRGTKEISK DQIMEQLGIGGAGRRNVPGGAVGVGGYQQQRGMPMQNSGVSRFLLPASDCEFTLNSLLDELQTDQWPVAPGNRPSRCTGVALSVAAGLLGACLPGTGARI VALVGGPCTEGPGAIISKDLSDPVRSHKDLDKDAAPYFKKAVKFYDSLAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSF KRVFDSGEKSLGLCFNGTLEINCSKDIKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSSCFTVFFDISSSEKSNAPGSANPQLYLQFLTSY QNPEGLTLLRVTTVTRRWVDSAVNSEELVQGFDQETAAVVMARFTSLKMESEEGFDATRWLDRNLIRFCSKFGEYRKDDPSSFTLNSFFSFFPQFMFNLR RSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIGADRILLLDSYFSVVVFHGMTIAQWRNLGYQNQPEHQVFAQLL QAPKDDAQAIIHERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEMAAGSDIIFTDDVSLQVFFEHLQRLAVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	1.73	0.8583
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	2.82	0.8462
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	3.31	0.8799
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	3.31	0.8324	CEF.2
AT3G48860			unknown protein		Potri.012G105400 [exp]	7.74	0.8340
AT1G20760			Calcium-binding EF hand family...		Potri.002G008600 [exp]	10.24	0.7938
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	11.61	0.8447
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	12.84	0.7970
AT1G62020			Coatomer, alpha subunit (.1)		Potri.012G074800 [exp]	13.41	0.8320
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	15.68	0.7665

Compare expression of checked genes

Potri.019G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.