Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 268 / 1e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 259 / 4e-83 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 206 / 1e-62 MO1 monooxygenase 1 (.1.2) AT2G35660 202 / 9e-61 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT2G29720 187 / 2e-55 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 134 / 2e-36 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 73 / 9e-14 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT2G22830 43 / 0.0004 SQE2 squalene epoxidase 2 (.1) AT1G58440 42 / 0.001 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003400 [exp] 712 / 0 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 711 / 0 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 587 / 0 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 581 / 0 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 580 / 0 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 575 / 0 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 571 / 0 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 275 / 2e-89 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 273 / 2e-88 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034838 [exp] 484 / 4e-171 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 475 / 1e-167 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 453 / 4e-159 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 447 / 5e-157 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034816 [exp] 416 / 6e-144 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 281 / 1e-91 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 271 / 5e-88 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 251 / 4e-80 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 244 / 3e-77 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 242 / 2e-76 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G003200.1 pacid=42773041 polypeptide=Potri.019G003102.1.p locus=Potri.019G003200 ID=Potri.019G003200.1.v4.1 annot-version=v4.1 ATGGAAATGATGGAGGATGTGGTGATAGTCGGAGCAGGAATTGCAGGGTTGGCAACAGCAGTGGCTTTGAAAAGAGTAGGGGTTCGAGCCCTGGTGTTAG AGAGATCAGAAGGGCTAAGAGCCACAGGAGCAGCCTTGACTCTATTTCCAAATGCTTGGCTTGCTCTTGATGCTCTTGGTGTTTCTCACAAGCTCACCCC CATTTATGCTCTTACATCGATGGGATATGTAACCAATGTTAGTGCTGGAGATGTTCAACAAGTCCACGCCCGAGTGGCCAATAATGGGATCTGTACTATG AATGGCTGCGGTGCTTCCATTGTTGTTATACATTTGGAAGATGGAACTACAATCAAATCTAAGGTTCTGATAGGCTGTGATGGGGTGAACTCGGTGGTGG CACGTTGGCTAGGACTAGCAGAACCGGTCCATTCAGGGCGGTCAGCTGTACGAGGTTTAGCAGTTTTTCCTCAAGGCCATGGATTTAAGCAAGAAGTTCA TCAGTTCGTGGATGTGGGCAAAAGAGCTGGTTTTATTCCTCTTAATGATAGAGAACTTTACTGGTTTTTAACCTACAACGGAGATAACATGGCGGGAGAT CCCGAACAAATACAGAAACAAGTACTTGAGAAACATGCAGAAAAGTTTCCTTCATCATACCTAGACGTGGTCCGGCATGCTGATCTTTCAACGTTAACAT GGGCACCGTTGAAGTTTAGGCAGCCATGGGGGATCATATTTGGAAAGCTAAGCAAAGGAAATGTGACAGTAGCTGGTGATGCTATGCACCCCATGACTCC TGACCTAGGACAAGGCGGTGGTTCATCACTAGAAGATGCTGTGGTATTGGGCAGACACGTTGGCAATTCAGTTATAAACAATGGAGGGCTGATTGTTCCA GGAGACATGGCTAAAGCCATAGATGATTATGTGAAGGAAAGGAGGTGGCGTGCTGCTTTTCTTGTCACAGGATCATATTTATCAGGATGGGTGCAGCTAG GTGGAGATAAATGGTGGATGAAATTTTTAAGGGATGGAGTATTTTACAAGTATCTTTTTGGCAGGATTTCCGGACTTGTGCATACAGATTGTGGCAAACT TCCTGCTATGTCCTTCGGTGATATGGATCACTCAAGTAAGAAGGACTAG
AA sequence Show only first row Show all	>Potri.019G003200.1 pacid=42773041 polypeptide=Potri.019G003102.1.p locus=Potri.019G003200 ID=Potri.019G003200.1.v4.1 annot-version=v4.1 MEMMEDVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGAALTLFPNAWLALDALGVSHKLTPIYALTSMGYVTNVSAGDVQQVHARVANNGICTM NGCGASIVVIHLEDGTTIKSKVLIGCDGVNSVVARWLGLAEPVHSGRSAVRGLAVFPQGHGFKQEVHQFVDVGKRAGFIPLNDRELYWFLTYNGDNMAGD PEQIQKQVLEKHAEKFPSSYLDVVRHADLSTLTWAPLKFRQPWGIIFGKLSKGNVTVAGDAMHPMTPDLGQGGGSSLEDAVVLGRHVGNSVINNGGLIVP GDMAKAIDDYVKERRWRAAFLVTGSYLSGWVQLGGDKWWMKFLRDGVFYKYLFGRISGLVHTDCGKLPAMSFGDMDHSSKKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003200 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003400 [exp]	1.73	0.8659
AT3G57450			unknown protein		Potri.009G058500 [exp]	6.00	0.8626
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	13.07	0.8477
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.013G007700 [exp]	13.49	0.8017
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	14.28	0.8433
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Potri.011G115600 [exp]	15.29	0.7925	ERF49,Pt-RAP2.2
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.011G056900 [exp]	17.77	0.7657	ERF44
					Potri.019G014354 [exp]	22.58	0.8441
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261500 [exp]	24.08	0.8242
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	25.92	0.8395

Compare expression of checked genes

Potri.019G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.