Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G38540 271 / 2e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 207 / 1e-62 MO1 monooxygenase 1 (.1.2) AT2G35660 200 / 1e-59 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT2G29720 186 / 1e-54 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 126 / 2e-33 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 79 / 1e-15 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT2G22830 51 / 1e-06 SQE2 squalene epoxidase 2 (.1) AT5G11330 50 / 1e-06 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT1G58440 43 / 0.0004 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003500 [exp] 795 / 0 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 765 / 0 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 746 / 0 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 616 / 0 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 600 / 0 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 586 / 0 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 571 / 0 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 282 / 1e-91 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 275 / 1e-88 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034838 [exp] 469 / 7e-165 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 459 / 9e-161 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 448 / 1e-156 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 440 / 1e-153 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034816 [exp] 402 / 4e-138 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 288 / 4e-94 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 280 / 1e-90 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 262 / 9e-84 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 254 / 7e-81 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 254 / 9e-81 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G003300.1 pacid=42773064 polypeptide=Potri.019G003300.1.p locus=Potri.019G003300 ID=Potri.019G003300.1.v4.1 annot-version=v4.1 ATGGAACTGATGGAGGATGTGGTGATAGTTGGAGCAGGAATTGCAGGCTTGGCAACAGCAGTGGCTTTGAAAAGAGTAGGGGTTCGAGCCCTGGTGTTAG AGAGATCAGAAGGGCTAAGAGCCACTGGTACAGCGTTGACCCTATCTCCAAATGCCTGGCTTGCCCTTGATGCTCTTGGTGTTTCTCACAAGCTCATCCC CCTTTATACTCCTTCACCCAAGGGATACGTAACCAATGTTAGTACCGGAGAAGTTCGAGAAGTCCTCTACCCTCGACAAGGAATTAGGACTCTTCACCGT AAAGTGTTGTTAGAGGCACTGGCAGAGGAATTGGCAACTGACTCAATTCGATTCTCTTCGAGGCTAGTTGCTTTTCAAAGTCTAGAACAAGGAGGTGATG CTTCCATGGCTGCTGTACACTTGGAAGATGGAACTACTATCAAATCTAAGGTTCTGATAGGCTGCGATGGGGTGCACTCGTTCGTGGCACGATGGCTAGG ACTGGCAGAACTGGTCCATTCAGGTCGATCAACGGTGCGGGGTTTAGCAGTTTTTCCTCAAGGCCATGGATTTAAACAAGAATTTCTTTTTTTCATGGAT GAGAGCGATAAGGCTGGTTTTGTTCCTCTTAATGATAGGGAACTTTACTGGTTTTTTTCTAGCCAAGGGGAAAAGATGTCAGGAGAGGCAGAGAAAATGC AAAGGGATGTGCTTGAGAAATGTACAGAAAAATTTCCCTCAGAATACCTAGACGTGGTGCGGCATGCCGATCTTTCCTCATTGTCATGGGCACCATTGAT GTTTAGGCCTCCATGGGGGATCATATTTGGAAAGCTAAGCAAAGGAAATGTGACAGTAGCTGGTGATGCTATGCACCCCATGACTCCTGATCTAGGAAAC GGTGGTGGTGCATCACTAGAAGATGCTGTGGTATTGGGCAGACACATTGGCAATTCATTTATAAACAATGGAGCCCTGATTGTTCCAGGAGACATGGCTA AAGCCATAGATGATTATGTGAAGGAAAGGAGGTGGCGTGCCGCTATGGTTGTCACAGCATCGTATTTATCAGGACGGATGCAGCAAGGAGATAAATGGTG GATAAAATTTCTCAGGGACAGAGCACTTTACAAGTATTTTTTCGGCTGGCTTTCTAGACTAGTATTTGTTTATGACTGCGGAAGACTTCCTGCTATTTCC TTTGGTGCAATGGATCTGTCCAGTAAGAAGGACTAA
AA sequence Show only first row Show all	>Potri.019G003300.1 pacid=42773064 polypeptide=Potri.019G003300.1.p locus=Potri.019G003300 ID=Potri.019G003300.1.v4.1 annot-version=v4.1 MELMEDVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGTALTLSPNAWLALDALGVSHKLIPLYTPSPKGYVTNVSTGEVREVLYPRQGIRTLHR KVLLEALAEELATDSIRFSSRLVAFQSLEQGGDASMAAVHLEDGTTIKSKVLIGCDGVHSFVARWLGLAELVHSGRSTVRGLAVFPQGHGFKQEFLFFMD ESDKAGFVPLNDRELYWFFSSQGEKMSGEAEKMQRDVLEKCTEKFPSEYLDVVRHADLSSLSWAPLMFRPPWGIIFGKLSKGNVTVAGDAMHPMTPDLGN GGGASLEDAVVLGRHIGNSFINNGALIVPGDMAKAIDDYVKERRWRAAMVVTASYLSGRMQQGDKWWIKFLRDRALYKYFFGWLSRLVFVYDCGRLPAIS FGAMDLSSKKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	0	1
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	1.73	0.9324
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003700 [exp]	1.73	0.9551
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003500 [exp]	2.44	0.9470
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	5.00	0.9251
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	5.65	0.9268
AT3G51370			Protein phosphatase 2C family ...		Potri.005G108500 [exp]	5.83	0.8967
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	7.74	0.9209
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	8.00	0.8998
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.001G023500 [exp]	8.36	0.8790
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032800 [exp]	8.77	0.9056

Compare expression of checked genes

Potri.019G003300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.