Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 224 / 9e-69 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 208 / 6e-63 MO1 monooxygenase 1 (.1.2) AT2G29720 206 / 3e-62 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 122 / 7e-32 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 76 / 1e-14 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT5G11330 49 / 3e-06 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT2G22830 44 / 0.0002 SQE2 squalene epoxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003600 [exp] 772 / 0 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 712 / 0 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 627 / 0 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 626 / 0 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 625 / 0 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 616 / 0 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 616 / 0 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 298 / 1e-97 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 297 / 2e-97 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034838 [exp] 521 / 0 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 507 / 1e-179 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 488 / 4e-172 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 479 / 5e-169 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034816 [exp] 443 / 5e-154 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 289 / 2e-94 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 286 / 5e-93 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 278 / 7e-90 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 270 / 8e-87 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 267 / 1e-85 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01266 [poplar] [flax] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.019G003400.1 pacid=42774119 polypeptide=Potri.019G003302.1.p locus=Potri.019G003400 ID=Potri.019G003400.1.v4.1 annot-version=v4.1 ATGGAAATGATGGAGGATGTGGTGATAGTCGGAGCAGGAATTGCAGGGTTGGCAACAGCAGTGGCTTTGAAAAGAGTAGGGGTTCGAGCCCTGGTGTTAG AGAGATCAGAAGGGCTAAGAGCCACAGGTGCAGCCTTGACTCTATTTCCAAATGCTTGGCCTGCTCTTGATGCTCTTGGTGTTTCTCACAAGCTCACCCC CATTTATGCTCCTACATCGATGGGATATGTAACCAATGTTAGTGCTGGAGATGTTCAACAAGTCCTCTTCCGAGTGGCCAATACTGGGGGCGATGTACAA GGAATTAGGACACTTCACCGCAAAGCACTGTTAGAGGCACTGGCAGAGGAATTGCCGGTTGACTCAATTCAATTCTCTTCCAAGCTAGCTGTCATTGAAA ATGAAGAGCAAGGCGGTGCTTCCATTGTTGTTATACATTTGGAAGATGGAACTACAATCAAATCTAAGGTTCTGATAGGCTGTGATGGGGTGAACTCGGT GGTGGCACGTTGGCTAGGACTGGCAGAACCTGTCCATTCAGGGCGGTCAGCTGTGCGAGGTTTAGCAGTTTTTCCTCAAGGCCATGGATTTAAGCAAGAA GTTCATCAGTTCGTGGATGTGGGCAAAAGAGCTGGTTTTGTTCCTCTTAATGACAGAGAACTTTACTGGTTTTTAACCTACAGCGGAGATAAGATGGCAG GAGAGCCCGAACAAATACAGAAACATGTACTTGAGAAACATGTAGAAAAGTTTCCTTCAACATACCTAGACGTGGTCCGCCATGCTGATCTTTCAACATT AACATGGGCACCGTTGATGTTTAGGCAGCCATGGGGCATCATATTTGGAAAGCTAAGCAAAGGACATGTGACAGTAGCTGGTGATGCTATGCACCCCATG ACTCCTGACCTAGGACAAGGCGGTGGTTCATCACTAGAAGATGCTGTGGTATTGGGCAGACACATTGGCAATTCAGTTATAAACAATGGAGGGCTGATTG TTCCAGGAGACATGGCTAAAGCCATAGATGATTATGTGAAGGAAAGGAGGTGGCGTGCTGCTTTTCTTGTCACAGGATCATATTTAGCAGGTTGGGTGCA GCTCGGTGGAGATAAATGGTGGATGAAATTCTTAAGGGATGGAATATTTTACAAGTATCTTTTTGGCAGGATTTCTGGACTTGTGCATAAAGATTGTGGC AAACTTCCTGCTATGTCCTTCGGTGATATGGATCACTCAAGTAAGAAGGACTAG
AA sequence Show only first row Show all	>Potri.019G003400.1 pacid=42774119 polypeptide=Potri.019G003302.1.p locus=Potri.019G003400 ID=Potri.019G003400.1.v4.1 annot-version=v4.1 MEMMEDVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGAALTLFPNAWPALDALGVSHKLTPIYAPTSMGYVTNVSAGDVQQVLFRVANTGGDVQ GIRTLHRKALLEALAEELPVDSIQFSSKLAVIENEEQGGASIVVIHLEDGTTIKSKVLIGCDGVNSVVARWLGLAEPVHSGRSAVRGLAVFPQGHGFKQE VHQFVDVGKRAGFVPLNDRELYWFLTYSGDKMAGEPEQIQKHVLEKHVEKFPSTYLDVVRHADLSTLTWAPLMFRQPWGIIFGKLSKGHVTVAGDAMHPM TPDLGQGGGSSLEDAVVLGRHIGNSVINNGGLIVPGDMAKAIDDYVKERRWRAAFLVTGSYLAGWVQLGGDKWWMKFLRDGIFYKYLFGRISGLVHKDCG KLPAMSFGDMDHSSKKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003400 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003200 [exp]	1.73	0.8659
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Potri.010G066600 [exp]	2.44	0.8417	Pt-GMPM13.1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G034000 [exp]	5.19	0.8869
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.003G128800 [exp]	8.36	0.8669
					Potri.006G044200 [exp]	11.83	0.8378
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	12.36	0.8360
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	14.49	0.8434
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	17.66	0.8518	Pt-WRKY11.1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G070900 [exp]	19.33	0.8147
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.005G172900 [exp]	20.24	0.7478

Compare expression of checked genes

Potri.019G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.