Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09850 323 / 5e-109 Transcription elongation factor (TFIIS) family protein (.1) AT5G05140 76 / 5e-15 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 68 / 3e-12 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT2G38560 42 / 0.0007 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307600 [exp] 547 / 0 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.016G033300 [exp] 58 / 5e-09 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 58 / 6e-09 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.016G138100 [exp] 41 / 0.0008 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002088 [exp] 320 / 1e-107 AT5G09850 276 / 9e-91 Transcription elongation factor (TFIIS) family protein (.1) Lus10003853 [exp] 313 / 2e-105 AT5G09850 268 / 4e-88 Transcription elongation factor (TFIIS) family protein (.1) Lus10039000 [exp] 77 / 2e-15 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Lus10027295 [exp] 63 / 1e-10 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1) Lus10022735 [exp] 44 / 0.0001 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 43 / 0.0002 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G003900.1 pacid=42773856 polypeptide=Potri.019G003900.1.p locus=Potri.019G003900 ID=Potri.019G003900.1.v4.1 annot-version=v4.1 ATGGATATTGATGATTTTAGATTGATATTGGAGAGTTCAGGTGTTGATGTTTGGACTTTCATTGATACAGCAATTGTTGTGGCTTCATTGGATTTTGGGT CTGAATTAAAGAGAAGGAGGGATGATATTGTGGAGAGGTTATTTGCATCATCAAGCTCATGTAGTAGATGTAGGGACAGGAGTCTTAATGACATTAATAT GAACAATACTAGTAATGGGGATGAAATAAAGGGTCTTGTAGAGAAGGAGAGTAGCCATGAAGAAGAGAAGGGGACAAGGGTGGCTGCAGATTCTCCTGTT ACACCAAGGTCTGTTAATGGTGATGGTGATGATGATGAATTGGATCCATATGGAGGGTTGTTTGATGATGAGCCAAAGAAGATTTTGGTTATTAAGCAAC AGCTTGAAGATATTGACCAGCCTGAAGATTCATTGGTTGATTTGCTTCAAAGTTTAGCAGATATGGATATTACATTTCAGGCACTTAAGGAGACTGATAT TGGGAGGCATGTGAATCGATTGCGAAAACATCCATCTAATGATGTTAGGAGATTAGTGAAGCAACTTGTCAGAAAATGGAAAGAAATTGTAGATGATTGG GTCAGGTTGAATCCACAAGGAGAGCATGCATCCTCTGGTTTAATGGCTGATGGGGACTCACCTCAGCAGAAGATTCCCCAGAATGGTCATCACCAGGTTC CTGATTTTGCTTACTCTCCCAACCCTCACAATGGGAGTTCTGGATCAGATAGGAATAATTCCGAACCTGAAAGAAAACCAAAACCAGCTCCTCCTCGAAA CCAAGCTCCGACCAAACCTACTCAAAAACCAGTCCCTGCATCTTCACCTGCTCCTTACAATGTACAGAGACAAAGAGAACAACCGAAAGCAAGCAGTTTT GATGCTGATCAAAGGCTTGCCTCGGCAAGTAAAAGGCTTCAAGCGAATTATAAAGAAGCTGAAAATGCCAAAAAACAAAGAACGATTCAAGTGATGGACA TTCACGAGATACCAAAACCCAAGAATAAGAACACCTTCTTTCCAAAGAACAGAGGTGCTGGTGGTTCTCATCAAGGGAGGCACTGGTGA
AA sequence Show only first row Show all	>Potri.019G003900.1 pacid=42773856 polypeptide=Potri.019G003900.1.p locus=Potri.019G003900 ID=Potri.019G003900.1.v4.1 annot-version=v4.1 MDIDDFRLILESSGVDVWTFIDTAIVVASLDFGSELKRRRDDIVERLFASSSSCSRCRDRSLNDINMNNTSNGDEIKGLVEKESSHEEEKGTRVAADSPV TPRSVNGDGDDDELDPYGGLFDDEPKKILVIKQQLEDIDQPEDSLVDLLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKQLVRKWKEIVDDW VRLNPQGEHASSGLMADGDSPQQKIPQNGHHQVPDFAYSPNPHNGSSGSDRNNSEPERKPKPAPPRNQAPTKPTQKPVPASSPAPYNVQRQREQPKASSF DADQRLASASKRLQANYKEAENAKKQRTIQVMDIHEIPKPKNKNTFFPKNRGAGGSHQGRHW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09850			Transcription elongation facto...		Potri.019G003900 [exp]	0	1
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.003G089500 [exp]	3.74	0.7396
AT5G24890			unknown protein		Potri.018G008200 [exp]	4.89	0.7302
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	6.16	0.7661
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	12.40	0.7245
AT1G21920			Histone H3 K4-specific methylt...		Potri.005G175800 [exp]	12.72	0.7042
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.015G089100 [exp]	13.96	0.7071
AT3G27870			ATPase E1-E2 type family prote...		Potri.001G349100 [exp]	14.73	0.6870
AT5G41620			unknown protein		Potri.003G135000 [exp]	15.09	0.7034
AT5G63930			Leucine-rich repeat protein ki...		Potri.013G051300 [exp]	19.20	0.7233
AT3G24150			unknown protein		Potri.006G067100 [exp]	20.24	0.7256

Compare expression of checked genes

Potri.019G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.