Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09840 406 / 4e-126 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 379 / 7e-117 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G62210 151 / 1e-40 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 154 / 1e-38 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 149 / 2e-36 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G61180 140 / 3e-36 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 122 / 1e-30 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G60940 121 / 1e-30 Putative endonuclease or glycosyl hydrolase (.1) AT2G15560 105 / 1e-23 Putative endonuclease or glycosyl hydrolase (.1) AT3G62050 77 / 5e-16 Putative endonuclease or glycosyl hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307700 [exp] 1250 / 0 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 164 / 2e-43 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 160 / 7e-41 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 161 / 8e-41 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 156 / 9e-41 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 153 / 3e-38 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 112 / 1e-25 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 108 / 3e-24 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033511 [exp] 408 / 9e-127 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 403 / 2e-124 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10009982 [exp] 146 / 4e-36 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 113 / 6e-26 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 62 / 3e-10 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 63 / 7e-10 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF01936 [poplar] [flax] NYN NYN domain CL0123 [poplar] [flax] HTH PF12872 [poplar] [flax] OST-HTH OST-HTH/LOTUS domain
Representative CDS sequence Show only first row Show all	>Potri.019G004000.1 pacid=42774176 polypeptide=Potri.019G004000.1.p locus=Potri.019G004000 ID=Potri.019G004000.1.v4.1 annot-version=v4.1 ATGATCATACCAAAGCCCTTTTCTTCAAAAACCCTCCTTTCACTCAGTACAAAACCCCCCTCTTCTTCACAATTTTTATATTCTATTTTCATCTCTCACT TCTCAACGTCATCACTAACACCTCGCCACTCTCACTCTCATTTTCATTCGGAATCGAAAAGTGTTAGGGTTTCAGTGTGGTGGGATTTTGAGAATTGCCA TTTGCCAAGTGGGGTTAATGTCTATAGAGTTTCTCAAGCTATTACTGCAGCTGTTAGGGGTAATGGGATTAAAGGGCCTATTCAAATTACAGCTTTTGGT GATGTTTTGCAACTTTCAAGAGCTAATCAGGAAGCACTTTCTTCAACTGGGATCAACTTGGCTCACATTCCTAATGGTGGAAAGAACAGTGCTGACAGGT CTCTTCTCATTGATCTTATGTGTTGGGTTTCCCAAAATCCACCACCTGCCCATCTTTTTCTGATTTCTGGTGATAGGGACTTTGCAAATGTTCTACACCG GTTGAGGATGAACAACTACAATATATTGCTTGCTACTAAAGATACTGCCCCAAGTGTTCTCTGCAGTGCTGCAAGCATCATGTGGCTGTGGAATTCTTTG GTCAAAGGGGAAAACCTATCTGGAAGGCATTTTAACCAACCCCCTGATGGTCCCTATGCCTCTTGGTATGGCTATTATAAGGGTCCTCTGGAAGACCCCT TCGCTGTTGTTGAGCAACCAATATGCTCAAAGGTCGAGGACATGCCTGAGGCTAGTTCAGAGCCTGCAGTCCGTCCAATTCCAAAAGCAGTTATGAAGAA AATTTGTCACATTTTGAGTTCATGTCCTAAAGGAATGTCAATTACTGACCTTCGAATAGAGTTGATGAAAAGTAAGGTGTCTGTCGATAAAGACTTGTAT GGGTATAAAAAGTTCTCCCGCTTCCTTTTATCCATGCCACATATATTGAAGCTCAAGGACAATGGTGATGGTCAGTTTAATGTACGTGGTGTCACTGTAA AAGTTCCCGAACCATTTCAGCCCGGTCTATGCAAGTCTACACCTACTGCTATTGACAATGGAAATCAACCCATTACCAGGTCTTCAAAGTCAAATAGTGA GGAAATTTCTGTTTCTGGACCTGTGGATGGGAAGTTGTCGTTGCCTTCATCTCCTAAACTAAATTTGGAAGCACCGCCAACAAAAGTGCAACAACCCTCT TCTCTTAATGAGAATGCTGTCAAAATGCATATTCAACAACTTCCAAAACAAATGAAACAGCTCCAACAGGCCCAGCCTCCAAAACAAATTGAACAGCCCC CTGCGGTTGCTGAAAAGGTTGAAATGGTTAATGCCAAGGTAATCAAGGATCATCTGCCTGCTGTGAAAGAACCAGTTTCTGCATCTGAAATGGGTTTTTT TAGGAAATTCTGGAGAAGATTGTTTGGTGGCAAGGATGATGATTCAATGTTGGAAAGTGATAATGCTCTAGTGGAATCTCCTGGTGATAGCATGGTGAAG AAAAATGAGTACACTTTGGAAGAATGTGATCCTTCTGGTGAGAGCCCTCAAGAGAAAGTTGAGAAGAAAATTGTAAAAACTCCAACTCAGGGTGATGATT TAGTGCATCCCATTGTGGAACCAACTTCGGAGAATAAAACTGCTATACGTTCTGAACTACATGGTGAAATGCCAAAAAAAAGTCCAGGTTTATTTAAGCG GATTTTGAATTGGTGTAAATTGCAGGGGAATAGTTCAGATACATCAAGTGATCAACCCACCGAAATACCTGAGCAGATAAACAGTCATGCAGGAAAAACT GAGGTTTTTTCTGAGCATTCTTTTTGGAGAGAGATGAAATCTTTTATTGACACGAAGAAGGGATCCCTCCTTATCTCACAATCAAGGACCAGGGAACAGA TAGCACGAAATCTGCTGAAGGAAGGACCTTTGGTTCTTAGATCTCACAATGAAAGCGATGTCCTTCAACTGGTGGACATGATAATATCAGAGAAGAAATG GGTGGAAGAATTTCCATCTGAAGCTTTCCCTTTCAAGCTCACTCGGTTTGCTGCACAGAGTACGGTGGGTGATTCTCCTGCTTCAAATGGACTGAGTTCT ATGTTTTTGAGCTCCCTATCACAGTCTAACTTGCAGAGACAGCCAGGACATGAAGGGGATAAAAAGATTCAGAACATTTCTCACACTGGAGTGTCCTCAC CTGTCTCTGATGCAAAGCCTTCTGCAAGGTCTAGAAGTGAGATATTAGGTGACTGTCAAAAGCTTGTGAAAGAGACATTGAAGGAATTTCCAGGAGGATA TAATATGGGCAGCTTTAGAAAGCTGTTCCTTGAGAGGTATGGCTATAACCTCAATGCCAAAAAGCTCGGTTACCCAAAGTTGGCATCCTTGCTTCAGATA ATGCCTGGGGTAGAAATAGAATCCAATTATATTATTCCTAGCAATGAAATGGCTAAGCGTTCAAGCGCGGGTAGAACTGTTCTTAATAATACCTATCCTA GATCAGCCAGTTCAGACAGTGAATTATCGGATGCATCAAAGAAGGATGATGAATCGGACTCTACATGGGAAGAACTTGGTCCTGTTGACAATTCTATTTC TGGCAAAGAGGCAAACGAATCAGTGTCAAGGATGAAAGGAATAGGTGAAAGTGTGAGGCAACCATCCCCTGATTATGAATATCCTCTCTCAGATGATGAA TTTTCAGATTCAGAAAAGGAGTCTGGGAAGGTAACTCGGCCTGGAGGGAAAGCAAAGCCTGCATTTAAAGATGTAAACAGCGCATTATTGCAAATGCTTG ATTCATGGTACAGCAGTAATGAAGGTGATATTAAGAACAAGCCAGAAAATCCGAAAAGCATGCTTGATTCATCCACAAATGGTTTCCAGTCATCTGATTC TTCTGTTGCCGATCTGGTTGAGAATAAAAATGAAGTGGTAGTTGACAGCATATTAAGTAGTTTGAAGAAATCAAAGAAGCCTAGGATTGGAGCTTGA
AA sequence Show only first row Show all	>Potri.019G004000.1 pacid=42774176 polypeptide=Potri.019G004000.1.p locus=Potri.019G004000 ID=Potri.019G004000.1.v4.1 annot-version=v4.1 MIIPKPFSSKTLLSLSTKPPSSSQFLYSIFISHFSTSSLTPRHSHSHFHSESKSVRVSVWWDFENCHLPSGVNVYRVSQAITAAVRGNGIKGPIQITAFG DVLQLSRANQEALSSTGINLAHIPNGGKNSADRSLLIDLMCWVSQNPPPAHLFLISGDRDFANVLHRLRMNNYNILLATKDTAPSVLCSAASIMWLWNSL VKGENLSGRHFNQPPDGPYASWYGYYKGPLEDPFAVVEQPICSKVEDMPEASSEPAVRPIPKAVMKKICHILSSCPKGMSITDLRIELMKSKVSVDKDLY GYKKFSRFLLSMPHILKLKDNGDGQFNVRGVTVKVPEPFQPGLCKSTPTAIDNGNQPITRSSKSNSEEISVSGPVDGKLSLPSSPKLNLEAPPTKVQQPS SLNENAVKMHIQQLPKQMKQLQQAQPPKQIEQPPAVAEKVEMVNAKVIKDHLPAVKEPVSASEMGFFRKFWRRLFGGKDDDSMLESDNALVESPGDSMVK KNEYTLEECDPSGESPQEKVEKKIVKTPTQGDDLVHPIVEPTSENKTAIRSELHGEMPKKSPGLFKRILNWCKLQGNSSDTSSDQPTEIPEQINSHAGKT EVFSEHSFWREMKSFIDTKKGSLLISQSRTREQIARNLLKEGPLVLRSHNESDVLQLVDMIISEKKWVEEFPSEAFPFKLTRFAAQSTVGDSPASNGLSS MFLSSLSQSNLQRQPGHEGDKKIQNISHTGVSSPVSDAKPSARSRSEILGDCQKLVKETLKEFPGGYNMGSFRKLFLERYGYNLNAKKLGYPKLASLLQI MPGVEIESNYIIPSNEMAKRSSAGRTVLNNTYPRSASSDSELSDASKKDDESDSTWEELGPVDNSISGKEANESVSRMKGIGESVRQPSPDYEYPLSDDE FSDSEKESGKVTRPGGKAKPAFKDVNSALLQMLDSWYSSNEGDIKNKPENPKSMLDSSTNGFQSSDSSVADLVENKNEVVVDSILSSLKKSKKPRIGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	0	1
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	3.00	0.8861
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	4.89	0.8808
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	5.74	0.8534	Pt-CIP111.1
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	6.00	0.8784
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005000 [exp]	6.92	0.8278	GTC901
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	7.34	0.8673
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132700 [exp]	9.53	0.8462
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	9.94	0.8563
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	10.48	0.8284
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	11.18	0.8249

Compare expression of checked genes

Potri.019G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.