Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64700 339 / 2e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 230 / 4e-73 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 211 / 8e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 199 / 2e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 191 / 4e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 189 / 2e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 188 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 180 / 3e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 179 / 5e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 178 / 1e-52 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307800 [exp] 560 / 0 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G192100 [exp] 262 / 3e-85 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 258 / 1e-83 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148600 [exp] 227 / 7e-72 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 221 / 9e-69 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 218 / 5e-68 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 212 / 3e-65 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 207 / 3e-63 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 206 / 1e-62 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033510 [exp] 316 / 3e-106 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028585 [exp] 230 / 9e-73 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018889 [exp] 226 / 5e-71 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008708 [exp] 217 / 5e-67 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 215 / 4e-66 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 213 / 2e-65 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 212 / 6e-64 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 208 / 1e-63 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028586 [exp] 207 / 2e-61 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10005965 [exp] 197 / 1e-59 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.019G004100.1 pacid=42773767 polypeptide=Potri.019G004100.1.p locus=Potri.019G004100 ID=Potri.019G004100.1.v4.1 annot-version=v4.1 ATGGGTGAAAAGAAGCCCTATTTGGCTGTGCTTTTAGTGCAATCAATCTATGGTGGTATGTTCATGCTATCCAAGGCTGCTTTCAATGGTGGTATGAACA ACTATGTGTTTGTCTTCTATAGACAGGCAGCAGCAACTCTTTTCTTAGCCCCTTTTGCTTTCTATTTCGAATGGAAAAATAGACCAACCCTATCGTTCGT GACCTTCTGCAAAATTTTCTTCCTCTCTCTATTTGGGATTAGTTTGTGCTTGGATATATTTGGTATTGGCATCGTCTATGCATCTGCAACTTTGGCTGCT GCAATTTCAAACTGCCTTCCTGTCGTCACTTTCTTCTTGGCACTTCTACTTAGAATGGAGGTGTTGAAATTGAGGTCAGTCTCAGGGATTGCGAAGATTG TTGGGATAATAGCATGTATTGCTGGTGCAATAACCCTTGCCTTATACAAGGGTCCCCACTTTAATCTTCTGTGTCTTCATCACCTCTTTGAGAGCCATAA CAGCCATGGAATTGTAAGTCATGTTCCTTCTAGCCAAACCAGGATAAAGGGTTGCTTCCTCTTGTTCGTGTCCAACATCTTATGGGGCTTATGGCTCGTG TTGCAGGGACGGGTTCTGAAAGATTACCCATCAAAGCTTCTATTCATAACTCTTCAGTGCTTTCTAAGCACAATTCAATTATTTGCCATTGCCATTGGCT TTGAAAGAGATCCTCGTGAGTGGGAGCTGGGCTGGAATGTTAGACTTCTTGCTGTGGCTTACTGTGGAATTGTGGTGACTGGTGTTACATTCTACTTGCA AGCATGGATTATAGAGAAGAAAGGGCCAGTGTTTTTGGCCATGTCTACACCAGTCACTTTGGTCTTTACAATGTTCTTTTCTGCTATTCTACTATGCGAG ATCATCACTTTGGGAAGTGTTTTGGGTGGGCTCATGTTGGTCGCAGGTCTTTATAGTGTTTTATGGGGAAAAAGCAAAGAAGAGAAAACGAATGATGCGA AGTGTTTAAAAGCTGAAGTTGACAAAGAACGCTCAGAGATGAAACAAGTAGTGCCAGTGGAAACTAAGGGCCCATCTTTAGTTTAA
AA sequence Show only first row Show all	>Potri.019G004100.1 pacid=42773767 polypeptide=Potri.019G004100.1.p locus=Potri.019G004100 ID=Potri.019G004100.1.v4.1 annot-version=v4.1 MGEKKPYLAVLLVQSIYGGMFMLSKAAFNGGMNNYVFVFYRQAAATLFLAPFAFYFEWKNRPTLSFVTFCKIFFLSLFGISLCLDIFGIGIVYASATLAA AISNCLPVVTFFLALLLRMEVLKLRSVSGIAKIVGIIACIAGAITLALYKGPHFNLLCLHHLFESHNSHGIVSHVPSSQTRIKGCFLLFVSNILWGLWLV LQGRVLKDYPSKLLFITLQCFLSTIQLFAIAIGFERDPREWELGWNVRLLAVAYCGIVVTGVTFYLQAWIIEKKGPVFLAMSTPVTLVFTMFFSAILLCE IITLGSVLGGLMLVAGLYSVLWGKSKEEKTNDAKCLKAEVDKERSEMKQVVPVETKGPSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	2.23	0.9769
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	3.16	0.9750
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	3.16	0.9473
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026500 [exp]	3.87	0.9719
AT3G05220			Heavy metal transport/detoxifi...		Potri.007G021200 [exp]	4.24	0.9632
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025900 [exp]	4.89	0.9694
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026700 [exp]	5.91	0.9654
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	7.48	0.9532
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	9.16	0.9537
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.008G101600 [exp]	9.69	0.8767	GA2.4

Compare expression of checked genes

Potri.019G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.