Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 385 / 6e-130 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 353 / 1e-117 RmlC-like cupins superfamily protein (.1) AT1G03880 349 / 6e-116 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 275 / 3e-86 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 141 / 1e-37 RmlC-like cupins superfamily protein (.1) AT1G07750 131 / 7e-34 RmlC-like cupins superfamily protein (.1) AT2G28490 65 / 6e-11 RmlC-like cupins superfamily protein (.1) AT4G36700 45 / 9e-05 RmlC-like cupins superfamily protein (.1) AT2G18540 45 / 0.0001 RmlC-like cupins superfamily protein (.1) AT5G26700 44 / 0.0001 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004200 [exp] 810 / 0 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 694 / 0 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 692 / 0 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 676 / 0 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 450 / 3e-155 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 436 / 1e-149 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 350 / 3e-116 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 136 / 1e-35 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 135 / 2e-35 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021180 [exp] 573 / 0 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 542 / 0 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 527 / 0 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 523 / 0 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 496 / 2e-173 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 445 / 3e-154 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 445 / 8e-153 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 442 / 6e-152 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 431 / 2e-147 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022929 [exp] 368 / 5e-123 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.019G004300.2 pacid=42773514 polypeptide=Potri.019G004300.2.p locus=Potri.019G004300 ID=Potri.019G004300.2.v4.1 annot-version=v4.1 ATGGGTTCTTGTTCTTTGTTATCTCTTACTCTTTGCTTTCTTGTTCTCTTCAATTGTTGCTTTGCACAAATAGAGCAAGTATCCTCACGACATGGCCAGC AACAGCAGGGGCGCCAACGACGCTCTCAACGTAGCGAATGTCAAATTGATAGGATCAATGCCCTCGAGCCTGCTCGAAAGATCAGATCAGAGGCTGGTGT CACTGAGATTTGGGACGAGAATGATGAGCAGTTTCAGTGCGCTGGAGTTGTAGTTATCCGTCATACCATTAACAACCGAGGCCTCTTGTTGCCTGCATAC TCCAATACACCTAAGCTCATCTATGTAGAACAAGGTAGGGGCATTCAGGGAGCTGTATTTCCTGGCTGTCCAGAGACGTTCCAATCATCAGGAAATTCTT CTCAAGATCGAAGAGAAAGCTCCGAAGACCAGCACCAGAAGGTTCGAAAAGTAAGAGAGGGTGATGTAGTTGCCTTGCCTTCGGGAGTTGCTGATTGGTT TTATAACAATGGTGATTCACCTCTCGTTCTTGTTCAACTTCTCGACACAAGCAATCCTGCCAACCAGCTTGATCAGGATTTCAGGGAATTTTTCCTGGCT GGAAACCCACGACAAGAATCACAAAGCCAAAGAAGCTCATACCAGAGAGGCCAATATGAAGGTCAACGTGGACGCCAAGACGAAGGTGAAAGTTGGAGAG AACAGCATGAAAGATCTCGCAATGTCTTCAGCGGTTTCAACGAGCAAATCCTTGCAGAAGCTTTCAACATTGACACCAAACTAGCAAGAAGGATGCAGAA CGAAAATGATAACAGAGGAATCATTGTCCGAGCTCAGCATGAACTTCAGGTGATCAGTCCACGACAGAGTCAAGAGGAGGAAGAAAGACAACAAGAATCC CGAAGGAGCACACGTCGTCGTCATGAGGACAACGGTGTGGAGGAAACTTTCTGCACCGCTAGGTTGAAGCTCAACATCAATGATCCAGAAGATGCTGATG TGTTTAATCCACGTGCCGGACGCCTCACTACTGTCAACAGCCTCAATCTCCCCATCCTTCGACATGTCCAGCTTAGCGCTGAGAGAGGTGTCCTTTACGC AAATGCTTTGATGTCACCACATTGGAACATCAATGCCCACAGCATAATGTACATCACAGGAGGAAATGGAAGGATTCAGATTGTTGGAGACAATGGACAG GCAGTATTTGATGGACAAGTTCGTAAGGGTCAAGTAGTAACAGCACCACAAAACTTTGCAGTGGTGATGAAGGCTGGAAGCCAAGGGCTCGAGTGGGTAT CATTCAAGACTAATGACAACGCACAAATCAGTCAATTGGCAGGACGAGTCTCTACCATCCGGGCCTTGCCTGACGAAGTGGTAGCAAACTCATTCCAGAT CTCAAGGGAAGATGCCAGGAGGCTTAAGAACAACAGGGATGAAGTTAGTGTTCTTACTGCGTCCCGTCAATCACAATATGAAAGGGATTAA
AA sequence Show only first row Show all	>Potri.019G004300.2 pacid=42773514 polypeptide=Potri.019G004300.2.p locus=Potri.019G004300 ID=Potri.019G004300.2.v4.1 annot-version=v4.1 MGSCSLLSLTLCFLVLFNCCFAQIEQVSSRHGQQQQGRQRRSQRSECQIDRINALEPARKIRSEAGVTEIWDENDEQFQCAGVVVIRHTINNRGLLLPAY SNTPKLIYVEQGRGIQGAVFPGCPETFQSSGNSSQDRRESSEDQHQKVRKVREGDVVALPSGVADWFYNNGDSPLVLVQLLDTSNPANQLDQDFREFFLA GNPRQESQSQRSSYQRGQYEGQRGRQDEGESWREQHERSRNVFSGFNEQILAEAFNIDTKLARRMQNENDNRGIIVRAQHELQVISPRQSQEEEERQQES RRSTRRRHEDNGVEETFCTARLKLNINDPEDADVFNPRAGRLTTVNSLNLPILRHVQLSAERGVLYANALMSPHWNINAHSIMYITGGNGRIQIVGDNGQ AVFDGQVRKGQVVTAPQNFAVVMKAGSQGLEWVSFKTNDNAQISQLAGRVSTIRALPDEVVANSFQISREDARRLKNNRDEVSVLTASRQSQYERD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004300 [exp]	0	1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004200 [exp]	2.23	0.8487	QLEG.4
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.011G040400 [exp]	2.82	0.8487
					Potri.018G090350 [exp]	26.19	0.7920
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136303 [exp]	26.94	0.6770
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011400 [exp]	30.33	0.7800
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026820 [exp]	33.00	0.7683
					Potri.001G004900 [exp]	38.72	0.7551
AT3G22060			Receptor-like protein kinase-r...		Potri.017G039883 [exp]	41.29	0.7016
AT4G13440			Calcium-binding EF-hand family...		Potri.019G028800 [exp]	41.89	0.7525
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	45.66	0.7499

Compare expression of checked genes

Potri.019G004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.