Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 627 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 501 / 1e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 491 / 2e-152 transmembrane receptors;ATP binding (.1.2) AT1G27180 444 / 8e-134 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 417 / 1e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 418 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 405 / 7e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 409 / 2e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40910 406 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 404 / 7e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 1070 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 1062 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 1035 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 957 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 951 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 922 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 900 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 897 / 0 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 882 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 626 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 616 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 614 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 558 / 3e-179 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 542 / 2e-173 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 539 / 4e-171 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 523 / 4e-167 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 474 / 9e-147 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 444 / 2e-136 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 441 / 6e-135 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G004599.1 pacid=42774536 polypeptide=Potri.019G004599.1.p locus=Potri.019G004599 ID=Potri.019G004599.1.v4.1 annot-version=v4.1 ATGGCTTCTGTATCCTTTGAGTCCCATTCCTCTTCTTCATCCTCTTCTAGACATGGATCGACCTACGATGTCTTTTTGAGTTTTAGAGGAGCAGATACTC GCAACAATTTTACAGATCATCTTTATGCTGCCTTAGACCAAGCAGGTATCTATACGTTTCGGGACGGTAATGAACTTCCTCCAGGACAGGAAATCTCCTC ACAACTCAGTAGGGCAATCCGAGAATCAAGGATTTCTGTAGTGGTTTTCTCCAAAGGCTATGCTTCTTCTAGATGGTGTCTTGACGAACTCGTAAAGATT CTTGAGTGTAGGCATGCCATGGGGCAGCTTCTTGTTCCTATATTCTATGATATCGATCCGTCATATGTGCGAAAACAGAAATGGAATGTTGGTGAAGCTC TTAAGAGAAAAGAAGAAGACTTTGAGATTGAAATGGAGAGGTTGAAAAGGTGGAGAGAAGCTCTTGATGAGGCTGGAAATATATCTGGATGGATTCTGAA GGATATGGCAAACGGGTATGAATCGAAATTTATTCAAAAGATTGTTGAAGATTTGTTGCATAAATTAGGTCCCAAATGCTTAGACGTTGCCAAGTATCCT GTAGGTATTGAGTCTCGTGTTGATTATATTATTGACCTGCTAAGCATCCACTCAAATGATGTTCGAGTTGTGGGTGTGTATGGGATGCCAGGAATAGGTA AAACAACAATAGCGAAAGCTGTATTTAATCAACTATGTCATGGATTTGAGGGAAGCTCTTTTATTTCGAATGTCAAAGAAAAAACAGTAGAGCAATTACA AGAGCAGCTTCTTTGTGATATTTTGAAACCAAATACTTGGAAGATCGATAATGTTTCTAAAGGAGTCAATTTGATGAAAGATCGTTTTCGTAACAAAAGA GTTCTTGTTGTTCTTGATGATTTTGATCAACTTAAACAACTAGAAGCATTGGTGAGAGAGAGAAATTGTTTTGGTCCAGGAAGTAGAATAGTCATTACAA CGAGAGATGAACATTTACTAACTCAAATTGAAGTGGATGGGAAATATCATGTTAAGGAATTGCATCAACATGAATCCCTTCAGCTTTTTAGTTTGCACGC CTTTAAGGACACCCATCCAGAGGAAGATTATGTGGAGCTATCGAATGCTATAGTTGACTATGCTGGAGGGGTTCCCTTAGCTCTTGAAGTTTTAGGTTCT TATTTGTTCAGAAGAAACATATCTGTATGGAAAAGTGCTATTAAGAAACTACGGAAAATTCCAAACAGACAAATTCAGAAAACACTTAGAATAAGTTTTG ACACCTTGGATGATGACAAAGTGAAGGCCATGTTCCTCGATATTGCATGCTTTTTCATTGGTTGGGACAAAGAATATGTAGTAGAAATACTCGATGGTCG TGGCTTCTTTCCTGATATCGGCATTGATATTCTCATCCAAAGGTCCCTCTTGTCAATTAATGATGAAAATGAGTTAAACATGCATGACCTCATAAGAGAC ATGGGCAGGGAGATTGCTCGTGAAGTGTCATATGACCATCCTGGAAAACGCAACAGAATTTGGCTTCTTGAGGATGCCTTAGATGTCCTCAACAACCAGA CGGGAACAGATGCTGTGGAGGGTCTCGCACTAGATGTTCGAGCATCAACAGTTGCATCTCTTAGCACAAAATCATTTACAAATATGAGACGTTTGAAATT ACTCCAAATCAATGGAGCACATCTTGCCGGAAGCTACAAGCTTCTACCGAATGAGTTGATATGGCTTTGTTGGCTTGAATGCCCTATGAAATCTTTGCCA TCTGATCTCCAGCTAAACAACCTGGTTGTTCTTGATTTGCAGCATAGTAACATCGAAGAACTTTGGAAGGGGACTAAGATTCTCAATAAGCTTAAAATCC TCAATCTTAGCTATTCCAAGCTCCTTGTCAAAACACCAAACTTCCAAGGACTCCCTAGTTTGGAGATACTAAAACTTACAGCTTGCACGAGTTTGGCCAA GGTACATCCATCTATTGGGCATTTAAAAAGGCTTGTTTCGTTGAATTTGGAGGGATGTTGCAGGCTAAAAACTCTTCCAGAAAGCATTTGCAACTTGAAA TCCATTGAAACTCTAAATATTAGTTTGTGCTCACAACTTGAGAAATTGCCAGAATTCTTGGGTGATATGGAATCCTTAACTGAGTTGTTAGCAAATGGAA CTGCAATTAAGCAACTTCCCGCTTCAACTGGGTATTTGAAGAAGCTAACAAGGTTATCATTGGTTGGAGACAGCTACAAACATGATCTACAATCTAAATC ATGGTTTTCTCGATTTTCTTCATGGCTTTCATGGCGAAGCTGTTCTACCTCCATAGCTATGCTACCAACTCCTTTAACTGGTTTGACCTCATTGAAAGAA CTAGATATAAGTTATTGTGGTCTACATGAAGCTTCAAGCTCCATTGATATTGGGAGTTTGTCCTGTCTTGAAAAGCTGAATTTGTCAGGGAGCAAATTCT CCAACCTGCCTTCTAGTATTGGGCACCTTCTTAATCTTAAGGATTTGTGGGTTCGTAGATGCCCAAATCTATTCCTATCAACCTCAGAACTTCCATTAAG TTTGACGAGGTTGTATGCTTGTATTTGCTCGACAATGGAAAGAGTGCCAGTTCTGGGAGAAAAGAGACTCTTAGTTACTTCAGTTGGCTGCCTAAATTTA ATAGAGTTTCGGCACATGGAACTTCTGGACACTAGCTCATCCATTCTGAACTTTGATGACTGCAACGATTTATCAAATAATTATAAGGAAACTCTTGTTC AGGAATTGTTCAAAGGTGAAATGTGTGAGATTAGCTTTTCTGCCAGTGAGATACCAGAATGGTTCAGCCTTCGGGGAGAAGGATCTTCATTATCATTTCA TTTACCTTCAGTTTTAGGTTCATATGGTAATCAACTCCAAGGGCTGCTTATTGGGGTTGTCTATGCCACCTCTTTAGAAGGGTCATTTGCTCCGTGTAGA ACTCTTTTAAGAAATAAGAGCAACGGTAAGGTAATGTTTGAAAGGTCCAGCAGCATCAAATTTGACCCAAGTTCCACTAGGAATTCTTGGATTCTGAGTC TACCGTTGATTGGGGGGTATCGATGCGCAGTGAAAGGAGTGGAGGAATTGGAGCTGAATGTAGAAATAAGCTCCAGTGGAGTTGAACAGTGTGGGGTTCA TCTGATAACAAAAAATAATGCTGTTTCAAATATTGGTAAGTTGGATCGTGACATTTACAGCCTTGCTCGAACAGATACAATGATAGTTCCATCTTACCAT CATCAAGCCGTAGCGTCTTCATCTCCTAATGAATGGTTGGAAAGTTGTTTAACAAGGGAGTTGCAAAGATGGAAAATTTACTCCGCGATTAAGGTTTCAT TTGGTATGGATTTTATATATTGA
AA sequence Show only first row Show all	>Potri.019G004599.1 pacid=42774536 polypeptide=Potri.019G004599.1.p locus=Potri.019G004599 ID=Potri.019G004599.1.v4.1 annot-version=v4.1 MASVSFESHSSSSSSSRHGSTYDVFLSFRGADTRNNFTDHLYAALDQAGIYTFRDGNELPPGQEISSQLSRAIRESRISVVVFSKGYASSRWCLDELVKI LECRHAMGQLLVPIFYDIDPSYVRKQKWNVGEALKRKEEDFEIEMERLKRWREALDEAGNISGWILKDMANGYESKFIQKIVEDLLHKLGPKCLDVAKYP VGIESRVDYIIDLLSIHSNDVRVVGVYGMPGIGKTTIAKAVFNQLCHGFEGSSFISNVKEKTVEQLQEQLLCDILKPNTWKIDNVSKGVNLMKDRFRNKR VLVVLDDFDQLKQLEALVRERNCFGPGSRIVITTRDEHLLTQIEVDGKYHVKELHQHESLQLFSLHAFKDTHPEEDYVELSNAIVDYAGGVPLALEVLGS YLFRRNISVWKSAIKKLRKIPNRQIQKTLRISFDTLDDDKVKAMFLDIACFFIGWDKEYVVEILDGRGFFPDIGIDILIQRSLLSINDENELNMHDLIRD MGREIAREVSYDHPGKRNRIWLLEDALDVLNNQTGTDAVEGLALDVRASTVASLSTKSFTNMRRLKLLQINGAHLAGSYKLLPNELIWLCWLECPMKSLP SDLQLNNLVVLDLQHSNIEELWKGTKILNKLKILNLSYSKLLVKTPNFQGLPSLEILKLTACTSLAKVHPSIGHLKRLVSLNLEGCCRLKTLPESICNLK SIETLNISLCSQLEKLPEFLGDMESLTELLANGTAIKQLPASTGYLKKLTRLSLVGDSYKHDLQSKSWFSRFSSWLSWRSCSTSIAMLPTPLTGLTSLKE LDISYCGLHEASSSIDIGSLSCLEKLNLSGSKFSNLPSSIGHLLNLKDLWVRRCPNLFLSTSELPLSLTRLYACICSTMERVPVLGEKRLLVTSVGCLNL IEFRHMELLDTSSSILNFDDCNDLSNNYKETLVQELFKGEMCEISFSASEIPEWFSLRGEGSSLSFHLPSVLGSYGNQLQGLLIGVVYATSLEGSFAPCR TLLRNKSNGKVMFERSSSIKFDPSSTRNSWILSLPLIGGYRCAVKGVEELELNVEISSSGVEQCGVHLITKNNAVSNIGKLDRDIYSLARTDTMIVPSYH HQAVASSSPNEWLESCLTRELQRWKIYSAIKVSFGMDFIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G004599 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.014G038900 [exp]	13.26	0.8593
AT3G01960			unknown protein		Potri.001G328300 [exp]	18.02	0.8289
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G157000 [exp]	44.54	0.8187
					Potri.005G239800 [exp]	54.96	0.8178
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	56.53	0.8181
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	144.00	0.7872
AT5G07900			Mitochondrial transcription te...		Potri.010G022700 [exp]	202.15	0.7862
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.005G087700 [exp]	207.21	0.7794

Compare expression of checked genes

Potri.019G004599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.