Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14930 317 / 3e-101 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 165 / 5e-44 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 99 / 2e-21 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 85 / 4e-17 alpha/beta-Hydrolases superfamily protein (.1) AT3G07400 46 / 0.0001 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007227 [exp] 1013 / 0 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.001G290600 [exp] 729 / 0 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 690 / 0 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.001G291033 [exp] 196 / 1e-59 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.007G100600 [exp] 168 / 9e-45 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 165 / 1e-43 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G291166 [exp] 136 / 3e-38 AT5G14930 55 / 3e-10 senescence-associated gene 101 (.1.2.3) Potri.012G074700 [exp] 114 / 2e-26 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G069600 [exp] 109 / 7e-25 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039444 [exp] 520 / 3e-169 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10009502 [exp] 484 / 9e-165 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 451 / 3e-152 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 445 / 1e-149 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 424 / 1e-142 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 391 / 1e-130 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10029534 [exp] 162 / 4e-42 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10039617 [exp] 151 / 1e-38 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10004841 [exp] 132 / 3e-36 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10042937 [exp] 80 / 3e-15 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.019G005256.1 pacid=42773538 polypeptide=Potri.019G005256.1.p locus=Potri.019G005256 ID=Potri.019G005256.1.v4.1 annot-version=v4.1 ATGAGCCAACATCCTCTATTTATCAGTGGACTAGATTTGGCGGACTTAGTGGTGAACTCTGATTTGCTCGAGCTATCATGCGGTGCTATAAAGGACCTTC AAACAGAAGCCAGTTCAGATCAGCAAGACTCTTGCAGTCTCTCCCTAAGATACAAGCTCGAGAAGAAATCAAAGTATACCCTCATAGCCTTCACCACTTC TACTTTATCAAGGAAAGAACTTCTTCAACAGGGAGGAGATTTGGTTTCATCAACAACTCTCATGGAGATGGATTTACCTATCTTTGACTTCTTATGCACT GAAAGAAACCGGTCGTTTTCCATTCATAGAGGTGCAATCACCCTTTTTAAGACCCATTTTAAGGAGCTGTCCCAGCTCAAAACTCAGATCCATGATTCAA AGACCGGTGAATTGCTGCGCACTCCATTAATTGTGACTGGACACTCAATTGGAGGATCAGTTGCTTCTCTATTTACCTTATGGCTTTTGGACAACATAAA AAGAAATCAGCCACCTCCGAAACTCCCCCTCTGCATCACTTTTGGCTCGCCATTTATTGGCAATCAAGGCCTCCGACAAGCAATGTTAGAATGTTTAACA TGGAATTCTTGCTTTCTCCATGTCGTCGGCAACAAGGACCTATTTCCAAAAGCTTCCATTTCCCACTACGATAGTCCTACTCAATCTGCCATAGAGGAAT ACAAGGCTTTTGGTACATTTATATTGTGTTCTGAGAAGGGATGTGCCTGTGTTGATGACCTTGAGGTTGTTTCAAGGTTATTGGAAATCACAAGAAGGCA AGCTTCTTGTGAAGCACAGGAGATAGATTATTATGTTGAGATAGTGAATGATCTGAAATCCAAAGTTATCATCAGTGGGGATTCTCAGCTTGATCTATCA TACGTGCAACCACTTAAGGCAGGAATAATCTTACAACTGGAGGCAATTGGAGTTGAAATGACCACCCAGCAACAACAGAGAAAGGTGGACAACAAAAATC TTATCTCCAAGTTAGAAGAAAGAGAAAAGGTCCTAATGGCAGAACGAGTGCAGACTATGGACCCAAGAAAAAGATTAAACCAGATAAAGATAAAAATGGC TCACCTAGAATGGTATCATAAGATTTGCAAGACTAAGGGGATAGGCTACTATGATTGTTACAAGAATCAACTTGGCAGCAGCGATAGGGATGTTACCAGG CTCAAGAAGTTTCTCACTAATTACTGGAAAAATTTTGTGGAGGGCGTGGAGAGAAAGCCTCAGAAAGAAGGCGCATTCATCCGGGGGACTTGGCTTTATT CAGGAAGAAACTATAGAAGAATGGTTGAACCACTTGATATTGCTGAATATTATAGAGATAGTGATAAAAGAGACTATCAAACTCATGGAAGATCTAGGCA TTACATTTTGCTGGAGCAGTGGCAGGAGGATGATGATGCAGAGAAACTCAAAAGCTCACCAAACAACAAGAAGAAACAAAATGTGGCTGGCATTCTCACA GAGGATTCTTGTTTCTGGGCAAAAGTGGAGGATGCTCTCATTTCATGCAAGTTGTTGAAGTCTGGAACCTCAAGTGCTGTGGAGAAACAATCTGCAAAAG AGAATCTGGATATGTTTGAGCAATATGCAATGAACCAAATCAATAACTATGCCGTATCTCCAGAAATTTTCTTGAAAGAAAGCAGTTTTATGAAATGGTG GAAAACGTTTCAGGAAATTATAGAAACATCCCACGATTCTCCACTCTGTGACTTCATGAAGAACGGAAGATATCTTCAATATGAGAAGGGTTCTACTTTC TTGCAGTAA
AA sequence Show only first row Show all	>Potri.019G005256.1 pacid=42773538 polypeptide=Potri.019G005256.1.p locus=Potri.019G005256 ID=Potri.019G005256.1.v4.1 annot-version=v4.1 MSQHPLFISGLDLADLVVNSDLLELSCGAIKDLQTEASSDQQDSCSLSLRYKLEKKSKYTLIAFTTSTLSRKELLQQGGDLVSSTTLMEMDLPIFDFLCT ERNRSFSIHRGAITLFKTHFKELSQLKTQIHDSKTGELLRTPLIVTGHSIGGSVASLFTLWLLDNIKRNQPPPKLPLCITFGSPFIGNQGLRQAMLECLT WNSCFLHVVGNKDLFPKASISHYDSPTQSAIEEYKAFGTFILCSEKGCACVDDLEVVSRLLEITRRQASCEAQEIDYYVEIVNDLKSKVIISGDSQLDLS YVQPLKAGIILQLEAIGVEMTTQQQQRKVDNKNLISKLEEREKVLMAERVQTMDPRKRLNQIKIKMAHLEWYHKICKTKGIGYYDCYKNQLGSSDRDVTR LKKFLTNYWKNFVEGVERKPQKEGAFIRGTWLYSGRNYRRMVEPLDIAEYYRDSDKRDYQTHGRSRHYILLEQWQEDDDAEKLKSSPNNKKKQNVAGILT EDSCFWAKVEDALISCKLLKSGTSSAVEKQSAKENLDMFEQYAMNQINNYAVSPEIFLKESSFMKWWKTFQEIIETSHDSPLCDFMKNGRYLQYEKGSTF LQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.019G005256 [exp]	0	1
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.007G031500 [exp]	3.87	0.7026
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141600 [exp]	6.32	0.6810
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	19.67	0.6701
AT2G46150			Late embryogenesis abundant (L...		Potri.003G133400 [exp]	31.89	0.6391
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.018G050800 [exp]	59.80	0.5606	Pt-MEK1.2
AT5G67550			unknown protein		Potri.007G132601 [exp]	66.00	0.5622
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	124.13	0.5414
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.019G043400 [exp]	246.90	0.5052

Compare expression of checked genes

Potri.019G005256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.