Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 567 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 563 / 0 ARA12 Subtilase family protein (.1) AT3G14067 549 / 0 Subtilase family protein (.1) AT2G05920 533 / 5e-180 Subtilase family protein (.1) AT3G14240 524 / 2e-176 Subtilase family protein (.1) AT1G01900 521 / 4e-175 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT4G34980 519 / 1e-174 SLP2 subtilisin-like serine protease 2 (.1) AT5G51750 500 / 4e-167 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 496 / 2e-165 ATSBT5.4 Subtilase family protein (.1) AT2G04160 483 / 2e-160 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 1258 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 1190 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 925 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 909 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 599 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 586 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.004G173900 [exp] 562 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G018900 [exp] 554 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 547 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007044 [exp] 925 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029570 [exp] 852 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 849 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 843 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 837 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006306 [exp] 832 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 825 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 824 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10007045 [exp] 820 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007036 [exp] 816 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.019G006570.1 pacid=42773338 polypeptide=Potri.019G006570.1.p locus=Potri.019G006570 ID=Potri.019G006570.1.v4.1 annot-version=v4.1 ATGTTTACCTCATCACGAGCTGTTATTCATTCAAAAGTCCGTTCATCCAGCGCTAAATCCATTATCAAGCAGGAAAGCAAGTTGAAAACTTACATTATCT TCTTAAAGAAACCAGAAGGCATGATGTCCGCAAAACGTGAAGATGTAGATAGTTGGTATCGATCATTTTTACCAACAGCTACCACCTCAAGCTCCAACCA ACAGCGCTTGGTACATTCCTACCACAATGTGGTCACAGGGTTTGCAGCAAAACTTACGGAGCAGGAAGCAAAGGCTATGGAAATGAAGGAAGGGGTCGTG TCAGCCCGGCCCCAGAAGATTTTCCATGTGAAGACAACTCATACTCCTAGCTTCTTGGGTTTACAGCAAAATTTAGGATTTTGGAACCATTCCAGTTATG GAAAGGGAGTGATAATTGGGGTCTTAGACACTGGAATAAAAGCAAGTCACCCTTCATTTAGTGACGAAGGAATGCCTCCTCCACCAGCAAAATGGAAAGG GAAATGTGATTTTAATGCAACTCTATGCAACAACAAGCTTATTGGTGCAAGAAGTTTATATTTACCTGGTAAACCTCCAGTTGATGATAATGGGCATGGG ACACACACAGCAAGCACAGCTGCTGGAAGTTGGGTCCAAGGCGCGAGCTTTTATGGTCAGCTCAATGGAACCGCAGTTGGCATAGCGCCCTTAGCTCACT TGGCAATATATCGAGTTTGTAATGGGTTTGGTTCTTGTGCTGACAGCGACATATTAGCTGGAATGGACACTGCAGTGGAGGACGGAGTCGATGTGCTTTC ACTGTCACTTGGTGGTCCATCAATTCCATTCTACGAGGATTCAATTGCAATTGGTGCATTCGGTGCCATTCAAAAAGGAGTTTTCGTGAGTTGCGCTGCT GGGAATTCAGGTCCCTTTAATCAGACATTATCGAACGAGGCCCCATGGATCCTAACTGTAGGTGCTGGTACTGTTGACAGAAACATAAGAGCAAAGGTGT TGCTTGGAAATAATGCTTCATATGATGGGCAATCGTTTTACCAGCCAACAAATTTTTCATCGACGTTGTTGCCACTTATTTATGCTGGTGCTAATGGTAA TGATTCAGCATTCTGCGATCCAGGGTCCTTGAAAGATGTTGATGTCAAGGGAAAGGTTGTGTTATGTGAGAGTCGTGGGTTTTCAGGAGCTGTTGATAAA GGCCAAGAAGTGAAGTATGCTGGTGGTGCTGCAATGATTCTCATGAATGCTGAGTCTTTTGGCAACATTACCACAGCCGATTTACATGTACTACCCGCAT CAGATGTTACTTATGCAGACGGCTTGAGTATCAAAGCCTATATAAACTCAACATCATCACCAATGGCCACAATACTTTTTGAAGGAACTGTTTTTGGGGT TCCATATGCTCCCCAGCTTGCTTATTTTTCCTCAAGAGGCCCAAGTTTGGCAAGTCCTGGGATCTTGAAGCCAGACATCATAGGCCCCGGCGTTGACATT CTAGCTGCATGGCCATATGCTGTGGACAACAACGGGAATACAAAATCCGCATTTAATATGATTTCAGGCACCTCAATGGCTACTCCTCATCTTACTGGCA TTGCAGCATTGCTTAAAAGCTCGCACCCTGACTGGTCACCTGCTGCCATAAAATCTGCAATGATGACTACAGCTAATCTAACAAATCTTGGAGGCACGCC TATTACTGATGATACCTTCGATCCTGTTAATGTGTTTTCCATCGGCTCAGGCCATGTGAACCCAACGAAAGCAGATGATCCGGGCCTCATTTATGATATC CAACCTGACGACTACATTCCTTACTTATGTGGTCTTGGTTACAACGACACGGCTATAGGAATCATCGTGCAGCGCTCCGTGACATGCCGGAACAGCTCAA GCATACCTGAAGCACAGCTAAACTATCCCTCGTTTTCTCTAAACTTGACGTCTAGTCCTCAGACATACACAAGGACAGTAACAAATGTTGGCCCTTTTAA CTCATCTTACAACGCTGAGATCATTGCACCACAAGGTGTTGATGTTAAAGTAACACCCGGTGTGATTCAATTCAGCGAGGGGAGTCCGAAAGCAACGTAT TCAGTGACATTTACTCGAACAGCCAACACGAATTTGCCATTTTCTCAGGGATATCTGAATTGGGTTTCTGCTGATCACGTTGTTAGAAGCCCAATTGCTG TTCTTTTTGCATAA
AA sequence Show only first row Show all	>Potri.019G006570.1 pacid=42773338 polypeptide=Potri.019G006570.1.p locus=Potri.019G006570 ID=Potri.019G006570.1.v4.1 annot-version=v4.1 MFTSSRAVIHSKVRSSSAKSIIKQESKLKTYIIFLKKPEGMMSAKREDVDSWYRSFLPTATTSSSNQQRLVHSYHNVVTGFAAKLTEQEAKAMEMKEGVV SARPQKIFHVKTTHTPSFLGLQQNLGFWNHSSYGKGVIIGVLDTGIKASHPSFSDEGMPPPPAKWKGKCDFNATLCNNKLIGARSLYLPGKPPVDDNGHG THTASTAAGSWVQGASFYGQLNGTAVGIAPLAHLAIYRVCNGFGSCADSDILAGMDTAVEDGVDVLSLSLGGPSIPFYEDSIAIGAFGAIQKGVFVSCAA GNSGPFNQTLSNEAPWILTVGAGTVDRNIRAKVLLGNNASYDGQSFYQPTNFSSTLLPLIYAGANGNDSAFCDPGSLKDVDVKGKVVLCESRGFSGAVDK GQEVKYAGGAAMILMNAESFGNITTADLHVLPASDVTYADGLSIKAYINSTSSPMATILFEGTVFGVPYAPQLAYFSSRGPSLASPGILKPDIIGPGVDI LAAWPYAVDNNGNTKSAFNMISGTSMATPHLTGIAALLKSSHPDWSPAAIKSAMMTTANLTNLGGTPITDDTFDPVNVFSIGSGHVNPTKADDPGLIYDI QPDDYIPYLCGLGYNDTAIGIIVQRSVTCRNSSSIPEAQLNYPSFSLNLTSSPQTYTRTVTNVGPFNSSYNAEIIAPQGVDVKVTPGVIQFSEGSPKATY SVTFTRTANTNLPFSQGYLNWVSADHVVRSPIAVLFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.019G006570 [exp]	0	1
AT1G32583			unknown protein		Potri.006G017600 [exp]	1.73	0.8263
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.017G009700 [exp]	2.23	0.7857
					Potri.001G055675 [exp]	2.44	0.8298
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	2.64	0.7758
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.010G223600 [exp]	3.46	0.8053
					Potri.011G149950 [exp]	8.12	0.7794
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	12.36	0.7439	AUX1.1
AT2G42410	C2H2ZnF	ATZFP11, ZFP11	zinc finger protein 11 (.1)		Potri.002G041700 [exp]	15.19	0.7431
					Potri.019G005913 [exp]	17.43	0.7540
AT1G22730			MA3 domain-containing protein ...		Potri.005G199200 [exp]	28.28	0.7434

Compare expression of checked genes

Potri.019G006570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.