Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06390 414 / 5e-143 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1) AT2G35860 389 / 1e-133 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1) AT3G11700 385 / 1e-131 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1) AT3G52370 377 / 4e-129 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006200 [exp] 620 / 0 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G198250 [exp] 559 / 0 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G244900 [exp] 543 / 0 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.008G012400 [exp] 502 / 8e-178 AT5G06390 577 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.006G200300 [exp] 423 / 9e-147 AT5G06390 616 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.016G066500 [exp] 410 / 1e-141 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013604 [exp] 365 / 2e-124 AT5G06390 619 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10029353 [exp] 354 / 2e-118 AT5G06390 600 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10016194 [exp] 246 / 3e-78 AT3G11700 492 / 5e-174 FASCICLIN-like arabinogalactan protein 18 precursor (.1) Lus10021247 [exp] 215 / 2e-66 AT2G35860 301 / 8e-99 FASCICLIN-like arabinogalactan protein 16 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.019G008400.1 pacid=42774474 polypeptide=Potri.019G008400.1.p locus=Potri.019G008400 ID=Potri.019G008400.1.v4.1 annot-version=v4.1 ATGATTAATGGTTTCTCAACAAAAAAAATACAGTATTTTTTTAATGCGATCATAGTTTTAAAACTCGACCCGGTTATTGACCCGGTCGACCCTCCGGGTC ACGGGTCAGATGGGTTGACTCGGGTCAACTCGGGTCAACCAAAAAAAACCTATAAAAAACAATATGGGGAAAACCATAGTAATGGCACTTATTCTGGCCA AATCAACTCAAACTCCGTTCTTGTAGCCCTTCTCGACTCCCATTATACAGAACTAGCTGAACTCGTTGAAAAAGCACTTCTTTTACAAACCCTTGAAGAT GCTGTTGGTAAACACAATATCACCATCTTTGCTCCTAAGAACGAAGCTCTTGAACGCGATCTTGATCCTGAATTCCAGAGGTTCTTGCTTGAACCTGGCA ATCTCAAGTCTCTCCAGACTCTTTTACTTTACCACATTGTACCCAACAGAATCAATCCTAGCCATAACTCTTCTCTTCAACATAACAGCACTTTGTGCCG CGATAGAGTCAAACTCAGCAGTCAGGAATCCGGCGAGAAGTTAATAGATTCCGCGAAAATCATTCAGGTGAATGCAGTGGAGAGGCCAGATGGAGTGATT CATGGGATAAAAAGGTTGCTAATCCCACGATCTGTTCAGCAGGATTTCAACAATCGCAGGAGTTTGCAATCAATCTCAGCTGTGAAACCAGAAGGAGCAC CAGAGGTTGATCCAAGAACACACAGGTTGAAGAAACCAGCACTACCAGCAAAACCCGGTTCAGCCCCGGTGCTACCAATCTATGATGCAATGGCGCCCGG CCCATCTCTTGCCCCAGCTCCAGCTCCTGGTCCAGGTGGACCTCATCACCATTTCAATGGAGAAAAACAAGTTAAAGATTTCATTGAAACCCTTCTTTTA TATGGAGGATACAATGAAATGGCTGATATTCTTGTGAATCTAACATCATTAGCAACTGAAATGGGAAGATTGGTCTCTGAAGGGTATGTGCTAACAGTTT TAGCCCCAAATGATGAAGCAATGGCTAAGCTTACAACGGACCAGTTGAGTGAACCGGGAGCACCAGAGCAGATAATCTACGGGCTGAACATTGAGGCATC AAAAAAACCCAAAAAAAATTAA
AA sequence Show only first row Show all	>Potri.019G008400.1 pacid=42774474 polypeptide=Potri.019G008400.1.p locus=Potri.019G008400 ID=Potri.019G008400.1.v4.1 annot-version=v4.1 MINGFSTKKIQYFFNAIIVLKLDPVIDPVDPPGHGSDGLTRVNSGQPKKTYKKQYGENHSNGTYSGQINSNSVLVALLDSHYTELAELVEKALLLQTLED AVGKHNITIFAPKNEALERDLDPEFQRFLLEPGNLKSLQTLLLYHIVPNRINPSHNSSLQHNSTLCRDRVKLSSQESGEKLIDSAKIIQVNAVERPDGVI HGIKRLLIPRSVQQDFNNRRSLQSISAVKPEGAPEVDPRTHRLKKPALPAKPGSAPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIETLLL YGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYGLNIEASKKPKKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	1.00	0.9814
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.012G006200 [exp]	1.41	0.9681
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.011G066100 [exp]	3.00	0.9081
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	6.48	0.8649
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	6.63	0.8867
AT3G57880			Calcium-dependent lipid-bindin...		Potri.006G058900 [exp]	7.74	0.8462
AT1G22060			unknown protein		Potri.005G170066 [exp]	9.48	0.8430
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	9.79	0.8703
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	11.48	0.8061
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	12.84	0.8713

Compare expression of checked genes

Potri.019G008400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.