Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08630 683 / 0 DDT domain-containing protein (.1) AT1G28420 49 / 1e-05 HD HB-1 homeobox-1 (.1) AT5G44180 44 / 0.0007 HD Homeodomain-like transcriptional regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G138900 [exp] 1189 / 0 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.014G173300 [exp] 53 / 7e-07 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.004G048675 [exp] 52 / 2e-06 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.009G049100 [exp] 49 / 2e-05 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.011G057700 [exp] 48 / 2e-05 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.007G135500 [exp] 47 / 7e-05 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.001G254300 [exp] 46 / 0.0001 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.017G016200 [exp] 45 / 0.0002 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039626 [exp] 768 / 0 AT5G08630 633 / 0.0 DDT domain-containing protein (.1) Lus10004282 [exp] 716 / 0 AT5G08630 645 / 0.0 DDT domain-containing protein (.1) Lus10029550 [exp] 566 / 0 AT5G08630 415 / 2e-136 DDT domain-containing protein (.1) Lus10015325 [exp] 53 / 1e-06 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 50 / 5e-06 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10014918 [exp] 48 / 3e-05 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10027346 [exp] 48 / 3e-05 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10009383 [exp] 45 / 0.0003 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10012302 [exp] 45 / 0.0003 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10020532 [exp] 44 / 0.0004 AT5G22760 731 / 0.0 PHD finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [poplar] [flax] DDT DDT domain PF10537 [poplar] [flax] WAC_Acf1_DNA_bd ATP-utilising chromatin assembly and remodelling N-terminal PF15613 [poplar] [flax] WSD Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Representative CDS sequence Show only first row Show all	>Potri.019G008541.1 pacid=42773273 polypeptide=Potri.019G008541.1.p locus=Potri.019G008541 ID=Potri.019G008541.1.v4.1 annot-version=v4.1 ATGCCATTATTAAAGAAAAAGGCGTTTCCCTTGTTGGAACCGCCTAAGGACTTGGATCCTAATGAGCTTGTATACCAAGTTCGATTCACAAAAGAGATAT TCCGAGATTATCAAATATATTTGAACCGGATAAACTTGTATCGCCAGAGAATTTGGACATGTAAAGTTAGTGGGAAAGGTAACTTGACTTATGAAGAGGC ATTGGTGTCTGAAAAACATGCAACTAAGAAGGTTCCAGAGATACCCAAAGAGCTCATGGCCATGGCACTTCACACCATTCAATTTAGTATGCTTTCATTG AAAGATCTTGCAGACAAGATAGCAGCAAAGTTGCAGGAAACTTTGTTTATAGGAGCTGAATTACATGGAAAGAGAGAGAAAAGTGATCTCTGCCCTTGCA AGATATTAAAGGTTCTGGAGGAGGGTACTGTTAAAACTAAATATGAGGTAGCATGGCTTGATAGGAATAAGAAAGTTACAGAAACTGCAATAGTGAACCG AAATGATCTGATATGGAAGAAATCTCCTTTCAGTAGGAACAGTTTGAAGCCTTTTATTCGGAAATCTACATACCGAAGTTTTCCTTGGGTGCTTCATGAC AAACTGGCAGAAAAATATCGAATCTCAAGGGATCCACCACAGGATTTAAAGGGCAAAGTTTTCATCCTGGATGGAATAGTCTATAATAAAAGAAAGAAAG ATGCCACGGATGTAGAAGAATCTGGAAAACTTAAAAAGAAGAAAGTGGAAGGTGAGGAAGCTGAGGCTACCGGGAAAGAAGATAATCAACAAAAGGAAGA GCCTATCAAGTATCCAATCAATGATCTTTTGGTGCAGCCTGGAACAGATGATCCAGTCTTTACAGCCCGCCCTTTGCCTTCAAGGGACTTTAAAGTTCCA ATGAATTGTGTTGGGGATCTTCTAATGGTTTGGGATTTTTGCTCCTCCTTCTGTAAGCTGTTACATCTGTCGCCGTTCTCTCTTGAAGAATTTGAAAATG CCATTTGCCATAAGGGCAGTAATGTGAATCTAATTGTTGAAACACATTCTTCTCTACTTCGGTTATTAAAACATGACAAAGATGAATATTTTTCAGCTGT TCAGAAAAGAATCCGATCATTGAAGATAACATTAACTAATTGGACAGAATATCTGTGTGATTTCGTAGAGATCATCAATGTTGGTGATTTTTCCACTCAC ATAACAACAATTAAGCGGGGGCACTACGGCCTTTTAGATGCTCAAGTCAAATTAGGAATCTTAAGAGAATTGGTCAATGAAGTCCTTGAAACAGATATTG CGAGGGAGAAGTTGGCTGAATATGTTGAAGAGCGGCAGGTACTCTTAGCAACAAAGAGGGGGGAAGCACTGGAGGAGGGCAGGAAAAAAAGAGAAAAGGA ACAGTTGAAGGCCAAATCTGTTGCTAATGCAGTAATGAATGGGCATGGTGCTGATATCATAGGAAAAAATCAACCTGTGTTGGCAAATGGGAATCACATT GGCCAGAATGGGCAGATCGCAAAAAAGAAGGGAGAGATCTTCTCAGCCAGACCAAACAATCCATCAAAAAGAAGTGAGAGTAGCCGTTCAGACATTGAAT CAAAGAAAACAGGCAAGAAGAAGAATATGAATGTGGAAGGCCAAGCAGAGAATGTGATAGATTTAACCAAAAGGGAAGCATTGATACTTTTGAGGGATGA AAAAAATACTGCAGCAAAACGGAGCGGCAAAGAGCAAAGGAGAGAATATTTTGAACGTGAGATAGAGAAACGGATCCTGCACACCAACCCTCTGGGTAAA GACCGAGATTATAACAGGTATTGGTGGTTCAAGCGTGATGGGAGGATGTTTGTTGAGAGTTCTGATTCCAAGCTATGGGGCTATTATTGTTGCAAGGAAG AGATTGATTTATTGATGGGCTCATTGAACCCCAAGGGTGAGAGAGAGAAGGCTCTTCGAAAACAGGTGGAGAAATTCTACAGCAGAATATGCATGGAACT CCAGAAGAGATCAAAGGATTTGGCTAACAGAATTGCATTGGAGGAGGCTGTGCAGAGGAGATCTACTCGTGTTCGGGCTCTACCAAGAGAGAATCCTGCC AATGCTTTCCTCAATTATGTTAACAAGTGGAAAGAAGACTAA
AA sequence Show only first row Show all	>Potri.019G008541.1 pacid=42773273 polypeptide=Potri.019G008541.1.p locus=Potri.019G008541 ID=Potri.019G008541.1.v4.1 annot-version=v4.1 MPLLKKKAFPLLEPPKDLDPNELVYQVRFTKEIFRDYQIYLNRINLYRQRIWTCKVSGKGNLTYEEALVSEKHATKKVPEIPKELMAMALHTIQFSMLSL KDLADKIAAKLQETLFIGAELHGKREKSDLCPCKILKVLEEGTVKTKYEVAWLDRNKKVTETAIVNRNDLIWKKSPFSRNSLKPFIRKSTYRSFPWVLHD KLAEKYRISRDPPQDLKGKVFILDGIVYNKRKKDATDVEESGKLKKKKVEGEEAEATGKEDNQQKEEPIKYPINDLLVQPGTDDPVFTARPLPSRDFKVP MNCVGDLLMVWDFCSSFCKLLHLSPFSLEEFENAICHKGSNVNLIVETHSSLLRLLKHDKDEYFSAVQKRIRSLKITLTNWTEYLCDFVEIINVGDFSTH ITTIKRGHYGLLDAQVKLGILRELVNEVLETDIAREKLAEYVEERQVLLATKRGEALEEGRKKREKEQLKAKSVANAVMNGHGADIIGKNQPVLANGNHI GQNGQIAKKKGEIFSARPNNPSKRSESSRSDIESKKTGKKKNMNVEGQAENVIDLTKREALILLRDEKNTAAKRSGKEQRREYFEREIEKRILHTNPLGK DRDYNRYWWFKRDGRMFVESSDSKLWGYYCCKEEIDLLMGSLNPKGEREKALRKQVEKFYSRICMELQKRSKDLANRIALEEAVQRRSTRVRALPRENPA NAFLNYVNKWKED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08630			DDT domain-containing protein ...		Potri.019G008541 [exp]	0	1
AT4G35890			winged-helix DNA-binding trans...		Potri.007G063600 [exp]	2.44	0.7125
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	2.64	0.7234
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	4.47	0.6608	Pt-GPA1.2
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	9.21	0.6468
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	17.74	0.6941
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.001G192300 [exp]	26.07	0.6221
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	36.86	0.6352	RGA.63
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	39.89	0.6353
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	44.40	0.6094	Pt-TKI1.2
AT5G21160			LA RNA-binding protein (.1.2.3...		Potri.001G220100 [exp]	47.62	0.6148

Compare expression of checked genes

Potri.019G008541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.