Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 243 / 5e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 241 / 1e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 239 / 1e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 215 / 3e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 210 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 202 / 2e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 187 / 2e-57 SGNH hydrolase-type esterase superfamily protein (.1) AT4G30140 187 / 2e-57 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 180 / 9e-55 GLIP7 GDSL-motif lipase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008906 [exp] 498 / 1e-179 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 494 / 6e-178 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 492 / 2e-177 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 488 / 6e-176 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 469 / 3e-168 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 460 / 9e-165 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 453 / 5e-162 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 446 / 6e-159 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008300 [exp] 432 / 8e-154 AT1G29670 318 / 6e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011998 [exp] 251 / 3e-82 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 248 / 3e-81 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015842 [exp] 246 / 2e-80 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 241 / 5e-78 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 239 / 2e-77 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 236 / 2e-76 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 235 / 2e-76 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 235 / 3e-76 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 234 / 3e-75 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 232 / 1e-74 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.019G008904.1 pacid=42774314 polypeptide=Potri.019G008904.1.p locus=Potri.019G008904 ID=Potri.019G008904.1.v4.1 annot-version=v4.1 ATGACAGACAAGATCAAAGTATGGTGCTTCCTACTTTTCCTATCGAGGCTGGTGTCGAATTTGCAAAATTGTGCTCATGCCGCTCCACAGGTGCCTTGTT TTTTCATATTTGGAGACTCGTTGGCGGATAGTGGCAACAACAACAACCTTGTCACAGCTGCTAAGGCCAATTACCGCCCATATGGAATTGACTTCCCAAA TGGAACCACCGGAAGGTTTACTAATGGCCGAACCGTAGTGGATATCATTGGTGAACTTCTGGGCTTTAACCAATTTATTCCACCATTTGCAACTGCTAGA GGCAGAGACATATTGGTTGGTGTTAACTATGCATCTGGGGCATCAGGGATTCGTGATGAGAGTGGAAGGCAACTGGGTGATAGAATCAGCCTAAATGAGC AATTGCAAAATCATGCTGCTACACTCAGTCGCTTGACTCAATTACTAGGGACTAAGCAGGCAGCAGAAAATTACCTTAATAAGTGCTTATATTATGTCAG CTTGGGCAGTAATGACTACTTAAACAACTACTTCATGCCTAGCAATTATACAACAAGCCGATTATACACCCCTGATCAATATGCCAAGGTTTTAATTGAC CAGTACAGTCAGCAAATAAAGCTTCTGTACCACCTAGGAGCCAGGAAAATTGCCTTGCCTGGACTTCGACCAATAGGCAGCATTCCATACTCATTTTCTA CTCTATGCCGCAACAATGTCTCTTGTGTGACCAATATAAACAACGCAGTCCTCCCTTTTAACGCAGGACTTGTGTTGCTACCCAATTTTTGA
AA sequence Show only first row Show all	>Potri.019G008904.1 pacid=42774314 polypeptide=Potri.019G008904.1.p locus=Potri.019G008904 ID=Potri.019G008904.1.v4.1 annot-version=v4.1 MTDKIKVWCFLLFLSRLVSNLQNCAHAAPQVPCFFIFGDSLADSGNNNNLVTAAKANYRPYGIDFPNGTTGRFTNGRTVVDIIGELLGFNQFIPPFATAR GRDILVGVNYASGASGIRDESGRQLGDRISLNEQLQNHAATLSRLTQLLGTKQAAENYLNKCLYYVSLGSNDYLNNYFMPSNYTTSRLYTPDQYAKVLID QYSQQIKLLYHLGARKIALPGLRPIGSIPYSFSTLCRNNVSCVTNINNAVLPFNAGLVLLPNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18970			GDSL-like Lipase/Acylhydrolase...		Potri.019G008904 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008404 [exp]	1.00	1.0000
					Potri.004G009900 [exp]	3.46	0.9998
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008902 [exp]	4.00	0.9999
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.019G014454 [exp]	4.58	0.9999
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005402 [exp]	5.65	0.9999
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.013G051100 [exp]	6.24	0.9995
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005400 [exp]	6.32	0.9998
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.014G166600 [exp]	7.07	0.9997	HCQL4
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008906 [exp]	7.48	0.9998
AT1G05835			PHD finger protein (.1)		Potri.002G233000 [exp]	14.28	0.9973

Compare expression of checked genes

Potri.019G008904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.