Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 295 / 1e-83 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 244 / 1e-66 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 244 / 2e-66 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12210 241 / 1e-65 RFL1 RPS5-like 1 (.1) AT1G12280 229 / 1e-61 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 228 / 2e-61 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 224 / 3e-60 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12220 224 / 3e-60 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 215 / 3e-57 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011169 [exp] 1296 / 0 AT4G27220 301 / 5e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G011826 [exp] 1145 / 0 AT4G27220 314 / 2e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 1093 / 0 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.019G002800 [exp] 959 / 0 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145532 [exp] 946 / 0 AT4G27190 266 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.018G137900 [exp] 917 / 0 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136500 [exp] 904 / 0 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 838 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135600 [exp] 831 / 0 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007261 [exp] 121 / 4e-27 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 120 / 5e-27 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 120 / 6e-27 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 117 / 4e-26 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10001366 [exp] 117 / 7e-26 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10028639 [exp] 115 / 1e-25 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 112 / 3e-24 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10001375 [exp] 108 / 2e-23 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10016316 [exp] 107 / 8e-23 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 104 / 4e-22 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G009198.1 pacid=42773085 polypeptide=Potri.019G009198.1.p locus=Potri.019G009198 ID=Potri.019G009198.1.v4.1 annot-version=v4.1 ATGGTTCGATCAAATGATCCATTTTGGAATGATGTTGAAGATATGAATGATGGAAGCATGAAATGTAAGTTTTGTGGGCATCCATTTGCCAAAGATACTT CCATTTCGAGGATCAAATGGCATTTGTCAGGAGTGAAAAGCCGTGGTGTTAAAATTTGTAAACATGTTCCAGAAGAAGTTCAAGATGCAGCCCGTGCAGC AATTGATGGCCCTCCAGAAAAAAAACGTAAGACTGCAGCAGGCTCAAGCAATAACGAGGTCATTAATCCAATTTCAGCTTCAGCGCAAGAACAGAACAAT GAAGTGATGGCACAACAAGGAGATGCTCTTTCCCATGAAGCGCTCGAAGATTGGATAGCTAGCTTCACTGTTGAAGAGATTGAACTTCTGGAGAGAGGTG GCTTTCCTGATCGGACATCAATTAATCAAGCTGCTGAGCCTGGAGGAGATTCATCCCAGCCATCAGATCCATTGTGTCTTGACCATGGAAGATATTATGA TCACCTCTGTGCTCCATCAATACACAATGATGTAATTATGGATGATGTGGAGAACATGGTTAGATTGAGGACAGAACCAGTGGAGGAGGACGCGGAGAAC ACTCATGGAAGATTAGTGCAGCCTGGCGCTGGAGCTAGCTCTTCTGGAGGGGTTGCACGCAACACAAATGAGATTAAAGGAGATGCACTACCAACGAGAA AAATGGTGGGTCAAGCATTCAAGGACCACAAGGAGTCTGTCCAGTCTTTGTTGGAGCACGATGAAGTTTCAAGCATTGGCATCTATGGGATGGGCGGAGT GGGTAAGACCACATTGGTGACACATATACATAATCAGCTTCTAGAAAGAGCAGACACTGATGTTTACTGGATTACTGTTTCACAAGATACCAGCATTAAT AAATTGCAGACAAGTCTCGCAAGACGAATTGGTTTAGATCTTTCCAGTGAAGATGAGGAGCTGCATAGAGCGGTTGCGTTGAAAAAAGAATTAATGAAGA AACAGAAATGGGTTCTGATTTTTGATGATTTGTGGAAGGCTTTTGACCTCCAAAAGCTGGGAGTTCCTGACCAAATTGAGGGATGCAAGCTGATTCTTAC AACTCGATCAGTCAAGGTTTGTCAACAGATGAAAACCCAACACACGATAAAAGTGCAGCCTATTTCGGAGAAAGAAGCTTGGACTTTGTTTATTGAGAGA CTTGGACATGACATAGCATTTTCTTCAGAAGTGGAAGGAATTGCTTTGAATGTTGTAAGGGAATGTGCTGGTTTGCCATTGGGAATTATTACAATAGCAG GAAGCATGAGAGGAGTGGATGAGCCACATGAGTGGAGGAATACATTGAAGAAATTGAAAGAATCAAAATATAAGGAAATGGAAGATGAGGTATTCCGATT ATTGAGGTTTAGTTATGATCAGCTAAATGATTTAGCATTACAACAATGTCTCTTGTACTGTGCATTGTATCCTGAAGATCATAGGATTGAAAGGGAGGAG TTGATAGGTTATTTGATCGACGAGGAAATAATTGAAGGAATGAGTAGCAGGCAAGCAGCATTTGACGAGGGCCACACGATGCTTGATAAACTTGAAAAAG TCTGTTTACTGGAAAGTTGTTTTAATTATTGTCATCGTAAATGTGTCAAGATGCATGACTTGATTAGGGATATGGCCCACCAAATACTCCAAACGAACTC TCCAGTCATGGTTGGGGATTTTGTTGGAGGATTACCAGATGTGGATATGTGGAAAGAGAATCTAGCGAGAGTCTATCTGAAGGGTCGTTATTTGGAGGAA ATTCCTTCTAGTCACTCACCAAGATGCCCCAATCTTTCAACTCTATTGCTATGTGATAATGAAAGGTTGCAATTTATTGCTGATTCTTTTTTCACACATT TGCATGGGCTCAAGGTTCTTGATCTGTCTCGTACTCGCATCATGGAATTGCCTGATTCTGTCTCTGAACTGGCGAGTCTCACTGCATTATTGCTCGAAAA ATGTAAGAATTTAAGGCATGTACCATCATTAGAAAAGCTCAGAGCACTGAAGAGGCTAGATCTCTCTGGTACTACGGCACTTGAAGAGATACCTCAAGGC ATGCAATGTCTATCCAACCTGAGGTATTTGAGGATGAATGGATGTGGTGAAAAGGAGTTTCCTAGTGGGATATTACCTAAACTTTCTCACCTGCAAGTAT TCATATTAGAGCAGTGGATTAATTATGATGTTTCCTATTTGATAGAGCATTCAATTGAATTGGAGGTCATCCACATTGCAGATTGCGATAGCATGGAGAG CGTGATTTCATCTTCTTGGTTCTGCCCTTCTCCAACACCATCGCCATCTTATAATGGTGTATTTTCTGGTCTTAAAGTGTTCAGTTGCTATGGATGTACT AGTATGAAGAAGTTGTTCCCTCTTGCCTTGCTGCCAAACCTCGTAAACCTAGAAAAGATTAAAGTTCGAGGATGTGAGAAAATGGAGGAGATAATAGGTG GAAGAAGATCAGATGAAGAAAGCAGCAGCACCGAATTCAAACTCCCAAAGTTAAGATCTCTGGCATTGTTTAATTTACCAGAACTGAAAAACATTTGTAG TGCAAAGCTGACGTGCGATTCTCTCCAAAAAATTGAAGTATGGAATTGCAACAGCATGGAGATCTTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTA GAAAAGATTACAGTTAGAGGATGTGAGAAAATGGAGGAGATAATAGGTGGAAGAAGATCAGATGAAGAAAGCAGCAGCACCGAATTCAAACTCCCAAAGT TAAGATCTCTGGCATTGTTTAATTTACCAGAACTGAAAAGCATTTGTAGTGCAAAGCTGACTTGCGATTCTCTCCAACAAATTGAAGTATGGAATTGCAA CAGCATGGAGATCTTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTAGAAAAGATTACAGTTAGAGGATGTGAGAAAATGGAGGAGATAATAGGTGGA AGAAGATCAGATGAAGAAAGCAGCAGCACCGAATTCAAACTCCCAAAGTTAAGATCTCTGGCATTGTTTAATTTACCAGAACTGAAAAGCATTTGTAGTG CAAAGCTGACTTGCGATTCTCTCCAACAAATTGAAGTATGGAATTGCAACAGCATGGAGATCTTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTAGA AAAGATTACAGTTAGAGGATGTGAGAAAATGGAGGAGATAATTTATGGAACAAGATCAAATGAAGAACAGGATATGGGTGAAGAAAGCGGCAGCAACAAC ACCGAATTCAAACTCCCGAAGTTAAGTTATCTGGACTTGGAAGATTTACCAACACTGAAAAGAATTTGTACTGCAAAAATTTCTTGCGATTCTCTCCAAG AAATTATAATAAAGAATTGCAAAAGCATGGAGAGCTTGGTTCCATTGTCTTGGATTTGCCTCGTAAACCTAGAAAGGATTACAGTTGCAGGATGTGAGAA AGTCGAGATAATATGTGGAACAAGATTAGATGAAGAAAGCAGCAGCAGCAGCAACAACACAGAATTGAAACTTCCAAAGTTAAGATATCTGGAATTGAAA GATTTACCAGAATTGAAAAGAATTTGTAGTGCAAAATTGATTTGCGATTCTCTCCAAAAAATTGCAGTAAGGAATTGCAATAGCATGGAAATCTTGGTTC CATCTTCTTGGATTTGCTTCGTAAACCTAGAAAGGATTACAGTTGCAGGATGTGAGAAAGTCGAGATAATATGTGGAACAAGATCAGATGAAGAAAGCAG CAGGAGCAACACCGAATTCAAACTCCCGAAGTTAAGATATCTGGAATTGGAAGATTTACCAGAACTGAAAAGAATTTGTGATGCAAAACTTATTTGCGAT TCTCTCCAAGAAATTATAGTAAAGAATTGCAAAAGCATGGAGAGCTTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTAGAACAGATTTCAGTTGCAA GATGTAAGAAGATGAAGGAGATAATAGGTGGAACAAGATCAGATAAAGAAAGCAGCAGCAATAACACCGAATTCAAGCTCCCAAAGTTAAGATCTATGAA ATTGAGTCGGTTACCAGAACTGAAAAGAATTTGTAGTGCAAAACTTATTTCCGATTCTCTCCAACAAATTGAAGTACGGAATTGCAACAGCATGGAGAGC TTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTAGAAAAGATTTCAGTTGCAAGATGTAAGAAGATGAAGGAGATAATAGGTGGAATAAGATCAGATG AAGAAAGCAGCAGCAGCAGCACCAAATTCAAATTCTCAAAGTTAAGATCTCTAGCATTGGAAGATTTACCAGAACTGAAAAGAATTTGGAGTGCAAACCT GATTTGCGATTCTCTCCAACAAATTGCAGTACGGAATTGCAACAGCATGGAGATCTTGGTTCCATCTTCTTGGATTTCCCTCGTACACCTAGAAAAGATT TCAGTTGCAGGATGTCACAAGATGAAGGAGATAATAGGTGGAACAAGATCAGATGAAGAAAGCAGCAGCAGCAGCACCGAATTCAAATTCTCAAAGTTAA AATCTCTGGCATATGTGGGATTGGATAACTCTTGTCTTTTTAAAGACGAGATTTTAAATGAGAATTTGATTAGCTTTAAAGATTGTGCCTTTTTAATAAT TTGA
AA sequence Show only first row Show all	>Potri.019G009198.1 pacid=42773085 polypeptide=Potri.019G009198.1.p locus=Potri.019G009198 ID=Potri.019G009198.1.v4.1 annot-version=v4.1 MVRSNDPFWNDVEDMNDGSMKCKFCGHPFAKDTSISRIKWHLSGVKSRGVKICKHVPEEVQDAARAAIDGPPEKKRKTAAGSSNNEVINPISASAQEQNN EVMAQQGDALSHEALEDWIASFTVEEIELLERGGFPDRTSINQAAEPGGDSSQPSDPLCLDHGRYYDHLCAPSIHNDVIMDDVENMVRLRTEPVEEDAEN THGRLVQPGAGASSSGGVARNTNEIKGDALPTRKMVGQAFKDHKESVQSLLEHDEVSSIGIYGMGGVGKTTLVTHIHNQLLERADTDVYWITVSQDTSIN KLQTSLARRIGLDLSSEDEELHRAVALKKELMKKQKWVLIFDDLWKAFDLQKLGVPDQIEGCKLILTTRSVKVCQQMKTQHTIKVQPISEKEAWTLFIER LGHDIAFSSEVEGIALNVVRECAGLPLGIITIAGSMRGVDEPHEWRNTLKKLKESKYKEMEDEVFRLLRFSYDQLNDLALQQCLLYCALYPEDHRIEREE LIGYLIDEEIIEGMSSRQAAFDEGHTMLDKLEKVCLLESCFNYCHRKCVKMHDLIRDMAHQILQTNSPVMVGDFVGGLPDVDMWKENLARVYLKGRYLEE IPSSHSPRCPNLSTLLLCDNERLQFIADSFFTHLHGLKVLDLSRTRIMELPDSVSELASLTALLLEKCKNLRHVPSLEKLRALKRLDLSGTTALEEIPQG MQCLSNLRYLRMNGCGEKEFPSGILPKLSHLQVFILEQWINYDVSYLIEHSIELEVIHIADCDSMESVISSSWFCPSPTPSPSYNGVFSGLKVFSCYGCT SMKKLFPLALLPNLVNLEKIKVRGCEKMEEIIGGRRSDEESSSTEFKLPKLRSLALFNLPELKNICSAKLTCDSLQKIEVWNCNSMEILVPSSWISLVNL EKITVRGCEKMEEIIGGRRSDEESSSTEFKLPKLRSLALFNLPELKSICSAKLTCDSLQQIEVWNCNSMEILVPSSWISLVNLEKITVRGCEKMEEIIGG RRSDEESSSTEFKLPKLRSLALFNLPELKSICSAKLTCDSLQQIEVWNCNSMEILVPSSWISLVNLEKITVRGCEKMEEIIYGTRSNEEQDMGEESGSNN TEFKLPKLSYLDLEDLPTLKRICTAKISCDSLQEIIIKNCKSMESLVPLSWICLVNLERITVAGCEKVEIICGTRLDEESSSSSNNTELKLPKLRYLELK DLPELKRICSAKLICDSLQKIAVRNCNSMEILVPSSWICFVNLERITVAGCEKVEIICGTRSDEESSRSNTEFKLPKLRYLELEDLPELKRICDAKLICD SLQEIIVKNCKSMESLVPSSWISLVNLEQISVARCKKMKEIIGGTRSDKESSSNNTEFKLPKLRSMKLSRLPELKRICSAKLISDSLQQIEVRNCNSMES LVPSSWISLVNLEKISVARCKKMKEIIGGIRSDEESSSSSTKFKFSKLRSLALEDLPELKRIWSANLICDSLQQIAVRNCNSMEILVPSSWISLVHLEKI SVAGCHKMKEIIGGTRSDEESSSSSTEFKFSKLKSLAYVGLDNSCLFKDEILNENLISFKDCAFLII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G009198 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123500 [exp]	1.73	0.8120
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	6.48	0.7849
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	6.63	0.7985
AT5G36930			Disease resistance protein (TI...		Potri.006G282900 [exp]	7.61	0.8115
AT5G36930			Disease resistance protein (TI...		Potri.006G283800 [exp]	8.12	0.7852
AT5G36930			Disease resistance protein (TI...		Potri.011G012000 [exp]	9.64	0.8093
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044732 [exp]	10.95	0.7824
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	13.78	0.7980
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	14.69	0.7441
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.018G002801 [exp]	16.43	0.6769

Compare expression of checked genes

Potri.019G009198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.