Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07650 600 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 596 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 588 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 576 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 561 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 556 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 479 / 9e-155 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 461 / 1e-146 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 454 / 1e-143 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 450 / 4e-143 RKF1 receptor-like kinase in flowers 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G009700 [exp] 1426 / 0 AT3G14840 894 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G008900 [exp] 1403 / 0 AT3G14840 884 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G009800 [exp] 1382 / 0 AT3G14840 899 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G308600 [exp] 1105 / 0 AT1G07650 912 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G007900 [exp] 1081 / 0 AT1G07650 883 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072591 [exp] 629 / 0 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073241 [exp] 625 / 0 AT1G29730 978 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 624 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 623 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 574 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 573 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005550 [exp] 482 / 5e-155 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 475 / 8e-155 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 457 / 1e-144 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 427 / 4e-135 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 429 / 1e-134 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 421 / 4e-133 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 381 / 8e-117 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 252 / 3e-75 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.019G009601.2 pacid=42774290 polypeptide=Potri.019G009601.2.p locus=Potri.019G009601 ID=Potri.019G009601.2.v4.1 annot-version=v4.1 ATGGCTACTGCACTCTCTGATATTTTGAGAGTCACATCTAGCTTACTTATGCTTATGCTAGTAATGTTTTGCATGGGAGCAATTAACTTGGAGGCCCAAG TTGGGAGCCTTGCTCCTGATGAAGTGGAAGCTCTACTTGAAGTAGCAACACAACTGGGCAAAAAAGGCTGGAATCGCAATATGAAACTGTGCAATGATAC AATTTTACCTCCAAAGCCAGATGCTGACAATAAAGTTGTTTGCAACTGCTCATTTCCTGGGGGTGTGTGCCGCGTTATTGCCATATATCTCAAAAGGCAA GATCTTGATGGTAGTCTCCCAAAAGCTATTGAGAAACTACCACAACTTAAACATTTAGATCTCTGGGCCAACTACCTAAGTGGCAATATACCATCTGAAT GGGCTAATACCAAGCTGGAAATATTGTCTATCGGCGTGAATAACTTGACAGGAAAAATTCCTAGCTCTCTGGGAACGATTACCACACTTAGATCCTTGAA CGTTCAGAACAATATGTTTTCTGGAACTGTTCCCCCTGAGCTTGGAGGCTTGGTTAACCTGGAGAATCTAACTCTCAGTGCCAATTATCTCACTGGAGAG TTACCCCAGGCTCTCACTAATCTTACCGGATTGAAGGAACTAAGGCTTAGCAGCAATAACTTCACTGGAAGAATACCTGATTTTATTCAGAGCTGGAAAC AACTTGATATATTAGAGATCCAAGCTGGTGGTTTCACTGGACCCATTCCTTTAACCATATCTCTCTTGACGAATCTAACTGATCTGAAGCTTTCTTTGTG TGCAGCGAAATCGATCTTTCTTACAACAATTTTACTTCAGAAGCAAAATGTAGAGAAACACTGTAAGATTGATTTCATTTTCCTTGCCTTGCCTTTGATT TTGAAAGTCTGCTTCTTTTTACATCACCGTTCACTTCATAACCTACAAAACTTAACTCTTCTTGTCTTGCCAGAAATCTGTTCAAAAGTACTTGGGGAGG GAACTATTCAGCGATATTCAGTGCACATAAATTGTGGGGGGCCAGAAGCCACCATTGGAAACACCATCTACGAAGCAGATAATGAGCCAGGAGGTGCAGC AAAATATGCGTCCAAAAGAGAGGATTGGCAAACAAGTACCACAGGACATATCTGGGATGTTCCTGCTTCCTTGGATAGCTACATAGCACAAAACAAGTCC ATGCTCAGAATGGACAACTCTGTATTGTACACAAATGCACGCCTCACGCCTTTGTCTCTCACCTACCACGTTCCCTGTCTGGTAAATGGGAATTACACAA TCAAGCTGCACTTTGCAGAGATAGTAATGAGGGATAACAGATCCTACTACAGTCTAGGAAGACGGATATTTGATGTTTATATTCAGGACATTGTTGTGTT GAAGGATTTTGATATAGTGAAGGAAGCGGGAGGGGTGGATAAGGTATACATTCATAATTATACAGCACCTGTAACCAATGGAGCTTTAGAGATCCACCTT CATTGGGCTGGGAAAGGAACCACAACGTCTCCCAAAAAAGGAATATATGGTCCTCTAATATCAGCCATTGATGTGGAATCTGACTTCAAGCCACCTGATA AAGGCAGGAGGAAGAGATTCATTGTCGCTGGAGCTGTGGTTTTGCCATTATTCCTCATTCTCACACTTCTATCCACTCTTTGGTGGAAAGGTTATTTGGG AGGAAGGAAATCGAGGGATCGAGAACTTGTTGGGTTAGATCTGCTAACTGGTATCTTCACCTTCAGACAAATCAAAGCCGCAACGAATGACTTTGATCCA GCAAACAAACTTGGAGAAGGTGGTTTTGGCTGCGTCTACAAAGGAGTACTATCAGATGGCACTCAGATTGCAGTTAAGCAGCTTTCGGCGAAATCAAAAC AGGGGAATCGCGAGTTTGTACTAGCAGCTTTTGTTGCTGGGACAAAGGAAATCAAGGCAACGAAGCTAGACTGGCGTACAAGGCAGAGGATATGTGTAAG TATAGCGAAAGGTCTGGTTTTCCTGCATGAGGAGTCGGCACTCAAAATTGTTCATAGAGACATAAAAGGTACCAATATCCTTCTTGACAAGGACATGAAC GCCAAGATATCTGATTTTGGAATGGCCAAGCTTGATGACGAGGACAACACCCACATCGACACCAGAGTTGCTGGAACAATGGGATACATGGCACCGGAAT ATGCATTATATGGTTACTTAACTTACAAGGCAGATGTATACAGCTTTGGTGTTGTAGCATTGGAAATTGTTTCTGGGACGAACAACGTCAAATTTAGAAG GGATGAAAATTTTGTATGCCTTCTAGATAGGGTTCTATATTTACAAAAAAATGGGGACATAATGGAGATGGTTGATCCAAGATTGGGGTCTGAATTCAAC AAGAAAGAAGTGGTTAGAATGATCAATGTAGCCCTGCTATGCACAAATCAGTCTCCAGCACTTAGACCTACAATGTCTACAGTAGTGAGCATGCTTGAAG GAAAAACTGATGTCGAGGAACTAGTCATGGTTCCAAGCACATTGGGTGATCCATCAGGGTTTTCTACGGCCTTACATAACAAGTTTGCTCAATCTTCTGT CAATGGAAGTTTAAGTGAAACTCAGTCCCTCGTGAAGTCATCAGAGGGACCATGGACTGCTTCTTCCTCTTCATCAGTCCAGGATCTTTATCCAATTAGT AAAAGCTGA
AA sequence Show only first row Show all	>Potri.019G009601.2 pacid=42774290 polypeptide=Potri.019G009601.2.p locus=Potri.019G009601 ID=Potri.019G009601.2.v4.1 annot-version=v4.1 MATALSDILRVTSSLLMLMLVMFCMGAINLEAQVGSLAPDEVEALLEVATQLGKKGWNRNMKLCNDTILPPKPDADNKVVCNCSFPGGVCRVIAIYLKRQ DLDGSLPKAIEKLPQLKHLDLWANYLSGNIPSEWANTKLEILSIGVNNLTGKIPSSLGTITTLRSLNVQNNMFSGTVPPELGGLVNLENLTLSANYLTGE LPQALTNLTGLKELRLSSNNFTGRIPDFIQSWKQLDILEIQAGGFTGPIPLTISLLTNLTDLKLSLCAAKSIFLTTILLQKQNVEKHCKIDFIFLALPLI LKVCFFLHHRSLHNLQNLTLLVLPEICSKVLGEGTIQRYSVHINCGGPEATIGNTIYEADNEPGGAAKYASKREDWQTSTTGHIWDVPASLDSYIAQNKS MLRMDNSVLYTNARLTPLSLTYHVPCLVNGNYTIKLHFAEIVMRDNRSYYSLGRRIFDVYIQDIVVLKDFDIVKEAGGVDKVYIHNYTAPVTNGALEIHL HWAGKGTTTSPKKGIYGPLISAIDVESDFKPPDKGRRKRFIVAGAVVLPLFLILTLLSTLWWKGYLGGRKSRDRELVGLDLLTGIFTFRQIKAATNDFDP ANKLGEGGFGCVYKGVLSDGTQIAVKQLSAKSKQGNREFVLAAFVAGTKEIKATKLDWRTRQRICVSIAKGLVFLHEESALKIVHRDIKGTNILLDKDMN AKISDFGMAKLDDEDNTHIDTRVAGTMGYMAPEYALYGYLTYKADVYSFGVVALEIVSGTNNVKFRRDENFVCLLDRVLYLQKNGDIMEMVDPRLGSEFN KKEVVRMINVALLCTNQSPALRPTMSTVVSMLEGKTDVEELVMVPSTLGDPSGFSTALHNKFAQSSVNGSLSETQSLVKSSEGPWTASSSSSVQDLYPIS KS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G009601 [exp]	0	1
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009700 [exp]	1.00	0.9491
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G008900 [exp]	4.89	0.8897
AT5G53110			RING/U-box superfamily protein...		Potri.001G091700 [exp]	8.48	0.8388
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	10.19	0.8552
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	15.42	0.8383
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.003G045200 [exp]	16.24	0.8377	IAR3.1
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	18.16	0.8320
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Potri.007G010300 [exp]	27.49	0.7693
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.009G043900 [exp]	27.56	0.7864
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.004G175000 [exp]	32.17	0.8135	UBC.11

Compare expression of checked genes

Potri.019G009601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.