Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14840 899 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 882 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 830 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 828 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 822 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 799 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 791 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 784 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 756 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 630 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G009700 [exp] 1922 / 0 AT3G14840 894 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G008900 [exp] 1894 / 0 AT3G14840 884 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G007900 [exp] 1813 / 0 AT1G07650 883 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G308600 [exp] 1562 / 0 AT1G07650 912 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G009601 [exp] 1150 / 0 AT1G07650 599 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 1003 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 941 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072591 [exp] 891 / 0 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 882 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 896 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 836 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005550 [exp] 806 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 754 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 753 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 753 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10042505 [exp] 717 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 617 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 612 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 325 / 5e-102 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.019G009800.1 pacid=42774704 polypeptide=Potri.019G009800.1.p locus=Potri.019G009800 ID=Potri.019G009800.1.v4.1 annot-version=v4.1 ATGGCTGCTGCACTCTCTGATATTTTGAGAGTCACATCTAGCTTACTTATGCTTATGTTACTAATGTTTTGCATGGGAGCAATTAACTTGGAGGCCCAAG ATGGGAGCCTTGCTCCTGATGAAGTGGAAGCCTTGCTTGAAGTAGCAACACAACTGGGCAAAAAAGGCTGGAATCGCAATATGACACTGTGCAATGATAC AATTTTACCTCCAAAGCTAGATGCTGACAATAAAGTTGTTTGCAACTGCTCATTTCCTGGGGAACCGTGCCACGTTATTGCCATATATCTCAAAAGGCAA GATCTTGACGGTACTCTCCCAAAGGCTATCGAGAAACTTCCACACCTTAAACATCTAAATCTCTGGGCCAACTACCTGAGTGGCAATATACCACCTGAAT GGGCTAATACCAAGCTGGAAACATTGTCTGTCGGCGTGAATCGGTTGACGGGAAAAATTCCTAGCTATCTGGGAAGGATTACCACACTTAGTTACCTGAA CATTCAGGACAATATGTTTTCCGGAACTGTTCCCCCTGAGCTTGGAGGCTTGGTTAGCCTGAAGAATCTAACTCTCAGTGCCAATTATCTCACTGGAGAG TTACCCCCTACTCTCACTAATCTTACCGGATTGAAGGAACTAAGGCTTAGCAGCAATAACTTCACTGGAAGAATACCTGATTTTATTCAGAGCTGGAAAC AACTTGATACATTAGAGATCCAAGCTGGTGGTTTCACTGGACCCATTCCTTCAAGCATCTCTCTCTTGACTAATCTAACTGATCTAAAAATAAGTAACTT ACTTGGTGGTTCAGAGTTTCCCAACCTAGAATCTATAGCAGGCATTAAGTATCTGCTATTGAGCAACTGCAACTTGTCAGGAAATTTTCCCATATATTTG ACCAGTATGGCACAGCTGAAAATTTTGGATCTCAGTTTCAACAGATTAAATGGTCCTCTTCCAACAAATTATGATGGCCTAAAAAGCTTGGAGAAAATGT ATCTTACAAGGAATATGCTTACAGGGCCCATCCCAGATTGGATCGACAAAAGAGATACTCGCTACGAAATCGATCTTTCTTACAACAATTTTACTTCGGA AGCAAAATGTAGAGAAACACTAAATCTGTTCAAAAGTACTTGGGGAGGGAACTATTCGAAACCTGTTGAGTGCCTGAGAGCTTGTTCTGAAGAGCGATAT TCAGTGCACATAAATTGTGGGGGACCAGAAGCCACCATTGGAAACACCATCTACGAAGCAGATAATGAGCCAGGAGGTGCAGCAAAATATGCGTCCAAAA GAGAGGATTGGCAAACAAGTACCACAGGACATATCTGGGATGTTCCTGCTTCCTTGGATAACTACATAGCACAAAACAAGTCCATGCTCAGAATGGACAA CTCTGTATTGTACACAAATGCACGCCTCACTCCTTTGTCTCTCACATACCACGTTCCCTGTCTGGTAAATGGGAATTACAAAATCAAGCTGCACTTTGCA GAGATAGTAATGAGGGATAACAGATCCTACTACAGTCTAGGAAGACGGATATTTGATGTTTATATTCAGGACATTGTTGTGCTGAAGGATTTTGATATAG TGAAGGCAGCGGGAGGGGTGGATAAGGTATACATTCATAATTATACAGCACCTGTAACCAATGGAGCTTTAGAGATCCGCCTTCATTGGGCTGGGAAAGG AACCACAAGGTCTCCCACAAAAGGAATATATGGTCCTCTAATATCAGCCATTGATGTGGAATCTGACTTCAAGCCACCTGATAAAGGCAGGAGGAAGAGA TTCATTGTCGCTGGAGCTGTGGTTTTGCCATTATTACTCATTCTCATATTTCTATCCACTCTTTGGTGGAAAGGTCATTTGGGAGGAAGGAAATCGAGGG ATCGAGAACTTGTTGGGTTAGATCTGCTTACTGGTATCTTCACCTTCAGACAAATCAAAGCCGCAACGAATGACTTTGATCCAGCAAACAAACTTGGAGA AGGTGGTTTTGGCTGCGTCTACAAAGGAGTACTATCAGATGGCACTCGGATTGCGGTTAAGCAGCTTTCGGCGAAATCAAAACAGGGGAATCGTGAGTTT GTGAACGAAATAGGCATGATTTCTGCTTTGCAACACCCAAATCTTGTTAGATTGTATGGATGTTGCATTGAGGGGAAGCAATTGTTGCTGGTATATGAAT ACATGGAAAACAATAGCCTTGCGCATGTTTTGTTCGGGACAAAGGAAATCAAGGCAACGAAGCTAGACTGGCGTACAAGGCAGAGGATATGTGTAAGTAT AGCGAAAGGTCTGGTTTTCCTGCATGAGGAGTCGACACTCAAAATTGTTCATAGAGACATAAAAGGTACCAATATCCTTCTTGACAAGGACATGAACGCC AAGATATCTGATTTTGGAATGGCCAAGCTTGATGACGAGGACAACACCCACATCGACACCAGAGTTGCTGGAACAATGGGATACATGGCACCGGAATATG CATTATATGGTTACTTAACTTACAAGGCAGATGTATACAGCTTTGGTGTTGTAGCATTGGAAATTGTTTCTGGGATGAACAACGTCAAATTTAGGAGGGA TGAAAATTTTGTATGCCTTCTGGATAGGGTTCTGTATTTACAAAAAAATGGGGACATAATGGAGATGGTTGATCCAAGATTGGGGTCTGAATTCAACAAG AAAGAAGTGGTTAGAATGATCAATGTAGCCCTGCTATGCACAAATCAGTCTCCAGCACTTAGACCTACAATGTCTACAGTAGTGAGCATGCTTGAAGGAA AAACTGATGTCGAGGAACTCGTCATGGTTCCAAGCACATTGGGTGATCCATCAGGGTATGCTACGGCCTTACATAAAAAGTTTGCTCAATCTTCTGTCAA TGGAAGTTTAAGGGAATCTCAGTCCCTCGTGAAGTCATCAGAGGGACCATGGACTGCTTCTTCCTCTTCATCAGCCCAGGATCTTTATCCATTTAGTAAA AGCTGA
AA sequence Show only first row Show all	>Potri.019G009800.1 pacid=42774704 polypeptide=Potri.019G009800.1.p locus=Potri.019G009800 ID=Potri.019G009800.1.v4.1 annot-version=v4.1 MAAALSDILRVTSSLLMLMLLMFCMGAINLEAQDGSLAPDEVEALLEVATQLGKKGWNRNMTLCNDTILPPKLDADNKVVCNCSFPGEPCHVIAIYLKRQ DLDGTLPKAIEKLPHLKHLNLWANYLSGNIPPEWANTKLETLSVGVNRLTGKIPSYLGRITTLSYLNIQDNMFSGTVPPELGGLVSLKNLTLSANYLTGE LPPTLTNLTGLKELRLSSNNFTGRIPDFIQSWKQLDTLEIQAGGFTGPIPSSISLLTNLTDLKISNLLGGSEFPNLESIAGIKYLLLSNCNLSGNFPIYL TSMAQLKILDLSFNRLNGPLPTNYDGLKSLEKMYLTRNMLTGPIPDWIDKRDTRYEIDLSYNNFTSEAKCRETLNLFKSTWGGNYSKPVECLRACSEERY SVHINCGGPEATIGNTIYEADNEPGGAAKYASKREDWQTSTTGHIWDVPASLDNYIAQNKSMLRMDNSVLYTNARLTPLSLTYHVPCLVNGNYKIKLHFA EIVMRDNRSYYSLGRRIFDVYIQDIVVLKDFDIVKAAGGVDKVYIHNYTAPVTNGALEIRLHWAGKGTTRSPTKGIYGPLISAIDVESDFKPPDKGRRKR FIVAGAVVLPLLLILIFLSTLWWKGHLGGRKSRDRELVGLDLLTGIFTFRQIKAATNDFDPANKLGEGGFGCVYKGVLSDGTRIAVKQLSAKSKQGNREF VNEIGMISALQHPNLVRLYGCCIEGKQLLLVYEYMENNSLAHVLFGTKEIKATKLDWRTRQRICVSIAKGLVFLHEESTLKIVHRDIKGTNILLDKDMNA KISDFGMAKLDDEDNTHIDTRVAGTMGYMAPEYALYGYLTYKADVYSFGVVALEIVSGMNNVKFRRDENFVCLLDRVLYLQKNGDIMEMVDPRLGSEFNK KEVVRMINVALLCTNQSPALRPTMSTVVSMLEGKTDVEELVMVPSTLGDPSGYATALHKKFAQSSVNGSLRESQSLVKSSEGPWTASSSSSAQDLYPFSK S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009800 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.008G131700 [exp]	7.07	0.8077	GAI.2
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	7.34	0.8683
AT5G07900			Mitochondrial transcription te...		Potri.011G005100 [exp]	7.74	0.8639
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	8.48	0.8748	HMGB906,ATHMG.1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G011650 [exp]	8.48	0.8567
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	16.97	0.8432
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	18.33	0.8361
AT4G02720			unknown protein		Potri.002G051500 [exp]	18.70	0.8629
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	19.49	0.8342
					Potri.014G035950 [exp]	19.87	0.7888

Compare expression of checked genes

Potri.019G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.