Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02550 68 / 1e-13 unknown protein AT4G02210 45 / 2e-05 unknown protein AT2G24960 43 / 7e-05 unknown protein AT1G30140 39 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G022650 [exp] 374 / 3e-133 AT4G02550 79 / 7e-17 unknown protein Potri.015G008050 [exp] 374 / 7e-133 AT4G02550 77 / 2e-16 unknown protein Potri.011G163248 [exp] 373 / 3e-132 AT4G02550 93 / 4e-22 unknown protein Potri.006G202550 [exp] 367 / 2e-130 AT4G02550 76 / 6e-16 unknown protein Potri.006G196716 [exp] 365 / 1e-129 AT4G02550 69 / 2e-13 unknown protein Potri.012G061366 [exp] 364 / 3e-129 AT4G02550 71 / 2e-14 unknown protein Potri.001G157750 [exp] 360 / 2e-127 AT4G02550 73 / 6e-15 unknown protein Potri.002G206500 [exp] 358 / 8e-127 AT4G02550 88 / 4e-20 unknown protein Potri.006G146100 [exp] 354 / 2e-125 AT4G02550 79 / 7e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013421 [exp] 46 / 6e-06 AT4G02210 418 / 1e-144 unknown protein Lus10026250 [exp] 45 / 3e-05 AT2G24960 750 / 0.0 unknown protein Lus10037335 [exp] 44 / 5e-05 AT5G27260 69 / 7e-13 unknown protein Lus10035759 [exp] 42 / 0.0002 AT5G27260 74 / 6e-15 unknown protein Lus10007175 [exp] 40 / 0.001 AT5G27260 67 / 2e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G009855.1 pacid=42773925 polypeptide=Potri.019G009855.1.p locus=Potri.019G009855 ID=Potri.019G009855.1.v4.1 annot-version=v4.1 ATGTCTCACATATTGCTTGAGATATTAGCTGATGAGGCACTTAAAGGAAGCAAACCTTCTTCCACCTTTAAAGCAAAATCTTTTTTCAACGTGCAATACG AGCCTAAGCATGTGGACAATCATCTCAAGACTGTAAAAAAAGAATGGGGAATAATAACCAAACTTAAAAATAAAAGTGGCTTTGGCTGGGATGATTGTTT GAAGATGATTACAGTTTCGAAAGATGCATATCCCAATCATGACAAGTATCTCAACAAAAAACTTGATATGTACGAGGCAATGACAATTGTTGTTGGAAAA GACATGGCAACCGGAAATTATGTCAAATCATATGTTGATGGAAAAGAGACATCTTCCTCTAGTACACAAAAGATGCAACATAGGAAGAGAAATCGTATGT ATGAAGATGATGGTGTTGAAAAGTTGTCTAAACAGATTGGAGATGTAGCATTTGCAATTCAAAGCCTCATCAAAAATCAACTTGATGTTAATGCGTTATA TGCGGAAGAGATGAAAATTGAAGGTTTTGATGAGATCACTCTTGAGGATGCATTTGATCATTTGGTCCAAAATGAAATGTTTGCAAAAGCATTTATGGCA AAAAATGCTAATTTGAGGAAAATTTGGGTTTAA
AA sequence Show only first row Show all	>Potri.019G009855.1 pacid=42773925 polypeptide=Potri.019G009855.1.p locus=Potri.019G009855 ID=Potri.019G009855.1.v4.1 annot-version=v4.1 MSHILLEILADEALKGSKPSSTFKAKSFFNVQYEPKHVDNHLKTVKKEWGIITKLKNKSGFGWDDCLKMITVSKDAYPNHDKYLNKKLDMYEAMTIVVGK DMATGNYVKSYVDGKETSSSSTQKMQHRKRNRMYEDDGVEKLSKQIGDVAFAIQSLIKNQLDVNALYAEEMKIEGFDEITLEDAFDHLVQNEMFAKAFMA KNANLRKIWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02550			unknown protein		Potri.019G009855 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.015G122000 [exp]	5.83	0.8181
AT3G12203		SCPL17	serine carboxypeptidase-like 1...		Potri.013G124750 [exp]	12.32	0.7668
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014342 [exp]	16.24	0.7986
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G148266 [exp]	22.64	0.7933
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	28.14	0.7829
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.008G084901 [exp]	30.04	0.7604
AT4G16580			Protein phosphatase 2C family ...		Potri.011G102200 [exp]	30.33	0.7649
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	30.82	0.7990
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	34.42	0.7729
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	42.42	0.7554

Compare expression of checked genes

Potri.019G009855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.