Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18465 150 / 3e-44 Chaperone DnaJ-domain superfamily protein (.1) AT3G58020 85 / 2e-19 Chaperone DnaJ-domain superfamily protein (.1) AT2G42080 80 / 1e-17 Chaperone DnaJ-domain superfamily protein (.1) AT2G41000 43 / 5e-05 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G308900 [exp] 392 / 3e-139 AT2G18465 149 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 40 / 0.0003 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G114600 [exp] 40 / 0.0007 AT4G07990 216 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.013G010800 [exp] 39 / 0.001 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020871 [exp] 228 / 2e-74 AT2G18465 115 / 1e-30 Chaperone DnaJ-domain superfamily protein (.1) Lus10033506 [exp] 215 / 2e-69 AT2G18465 103 / 3e-26 Chaperone DnaJ-domain superfamily protein (.1) Lus10016258 [exp] 99 / 2e-24 AT2G42080 213 / 5e-69 Chaperone DnaJ-domain superfamily protein (.1) Lus10029287 [exp] 95 / 5e-23 AT2G42080 206 / 5e-66 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.019G010000.2 pacid=42773210 polypeptide=Potri.019G010000.2.p locus=Potri.019G010000 ID=Potri.019G010000.2.v4.1 annot-version=v4.1 ATGATTATGCAAATGCCCCGATGGAGAAACGTGATTTTACTCAAGAATTCATTGGTACCAGCTTCATCACAATCAATAACAACAAGGACCCATTTTGCTT CAATTCATTCTACACCTATTGCATGCGAGAAACGGAAGAGCAAACGGGTTGATGATAACAGAGGATCTCAAAAGCCATCTAAGGATTACATAAAATTTGT AAGACGCCAAAAACGTGCTGATGAGAAGAGAGCATTGAAAGACCTTCTCTACAATAATGGACCTCTTAGAATATTTCAGCACAAGGACCCAGTATGGTCA TCCGATGCAGAGCCACCATTTGGCTCCAGAAAAAGGAATGAAAAGGCTTATGCTCGATCTGCTAAGAAATATCACCAAGACAAAATAAGAAGTAAGCTAA GAAGAGAGAGTTCTGCTGAGGACTCTGGCGATCCCGAGACAGTTTTTCATGCAACATTTGGAAACAGATGGTATACGTGGTCTAATAAGTCTTTCCAAGG AGAACCATCTGGATTTGAGTGGAGAGAGCCTCCAAAGTGGAAGGACCAAAGATACAAAGAATGGGATGCTAATCGAGAAACAGAGTCTGGCAACGCATCG TATTCTGTGGGATCACATTCTGACAGAACAATCCTTGGTCTGCCTCTAACCGGTCCTTTAAAGATTGAAGATGTTAAGAACGCTTTCCGCTTATCAGCTT TAAAATGGCATCCGGATAAGCATCAAGGTGCTTCACAGGCAGTTGCCGGAGAGAGATTCAAACTTTGTGTCAACGCATACAAATCATTATGTGATGCTCT CGCCTGA
AA sequence Show only first row Show all	>Potri.019G010000.2 pacid=42773210 polypeptide=Potri.019G010000.2.p locus=Potri.019G010000 ID=Potri.019G010000.2.v4.1 annot-version=v4.1 MIMQMPRWRNVILLKNSLVPASSQSITTRTHFASIHSTPIACEKRKSKRVDDNRGSQKPSKDYIKFVRRQKRADEKRALKDLLYNNGPLRIFQHKDPVWS SDAEPPFGSRKRNEKAYARSAKKYHQDKIRSKLRRESSAEDSGDPETVFHATFGNRWYTWSNKSFQGEPSGFEWREPPKWKDQRYKEWDANRETESGNAS YSVGSHSDRTILGLPLTGPLKIEDVKNAFRLSALKWHPDKHQGASQAVAGERFKLCVNAYKSLCDALA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18465			Chaperone DnaJ-domain superfam...		Potri.019G010000 [exp]	0	1
AT3G29010			Biotin/lipoate A/B protein lig...		Potri.017G085100 [exp]	6.00	0.7144
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Potri.008G080700 [exp]	10.77	0.7503
AT2G28430			unknown protein		Potri.004G210800 [exp]	24.85	0.7311
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	28.98	0.7242
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Potri.011G166800 [exp]	32.75	0.6766
AT4G03150			unknown protein		Potri.014G135400 [exp]	35.88	0.6663
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.008G156500 [exp]	36.60	0.6866
AT3G09890			Ankyrin repeat family protein ...		Potri.006G121500 [exp]	37.68	0.7142
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	40.34	0.6680	FUS12.2
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	43.00	0.6680

Compare expression of checked genes

Potri.019G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.