Plant FIBer expression Database

Potri.019G010700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1)
AT3G49590 164 / 3e-43 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G309800
[exp]
783 / 0 AT3G18770 434 / 2e-144 Autophagy-related protein 13 (.1)
Potri.012G004400
[exp]
189 / 3e-52 AT3G49590 402 / 9e-133 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006790
[exp]
320 / 5e-102 AT3G18770 380 / 3e-125 Autophagy-related protein 13 (.1)
Lus10005812
[exp]
301 / 8e-95 AT3G18770 385 / 2e-127 Autophagy-related protein 13 (.1)
Lus10019097
[exp]
181 / 4e-49 AT3G49590 466 / 4e-158 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Lus10034457
[exp]
174 / 7e-47 AT3G49590 460 / 1e-155 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF10033 ATG13 Autophagy-related protein 13
Representative CDS sequence
>Potri.019G010700.9 pacid=42774191 polypeptide=Potri.019G010700.9.p locus=Potri.019G010700 ID=Potri.019G010700.9.v4.1 annot-version=v4.1
ATGGCATCATCAAATAATAGTACACACACTGAGGCTGCAGAGATGGAACAAATTATCACTGAATTTTTTCCTAAGAGTCTTCAGATTATACTTGAGTCGA
GGTCTCCTTTCATGTCATCGCGTAATTATAGTGGTGAACAAATGGTATCCTTATCTCCATCTTCTTCGTCCTCCTCCTCGCCGAGTGTGAGGCCAAGAGA
TAAATGGTTCAATTTAGCTCTTAGGGAATGCCCGGCTGCTCTTGAGAATCTTGATCTTTGGCACCAAAGCTATTTGGAACCGATGATTGTTGATGTGATT
TTGGTGCAGGTGCCACCAGTTCGGTGGGATCCTGTGAATTATCCCCCCCAAAGGGAGCCTGTTAGGAATTTTTCGACCAAGGATCAGTATCCATTTCACT
GGAATTCAGATCAGGAAGAATTAGGGTGTGAGGGTAAGATTGAAAAGATTGTAGAGAGGTGGGAAGTGCAGTATGAGGGTCGGAAGTCAAGGGATAGTGG
TACTGGGAGCAGGAAACTTAGCAATACCTTTCAAACATGTTATATGAAATCAATATTACTTTTCAGGTCTTTGTATGCAACTGTTAGGCTTTTACCTGCA
TATAAAATTTTCCGTGACCTCAATTCATCAGGGAAAATTCGTTCATACACGCTTACACATAGGGTGTCTTCTTTTGTTGAGCCCTTTACACGCGAAGAAG
AGGCTGAAATGCAGCGATTTGTGTTCACCCCAGTGGATACTTCCTGTGGTAGGCTTTGCCTTTCGGTGCTGTATCACTCTTCATTATCAGATGTCAGCTC
TGAGTCGTCAACTCCTGTGTCCCCCCAATTTATCCCAGATTATGTTGGGAGTCCTTTGGCAGAACCAGTGAAGAGATTCCCCTCTCTTCCTGTGTCGCAA
GGTTCTCTGTTATCTTTGCCATTCTCAAGACAACATAGTTGGTACTATGACCATAATAAAGCCTCACCACCTTCATTTTCTTTCTCACCATCACCTAATC
GCTCAGGAAAGCATGGATCAATATCTAATCCTAGTTCCTGTCGATTCCAACCTTCGAGCTTGCCTCCTCATCCACCTGAAGTGCCTTCAGTTCATAAGAA
GAATACGAGCTTTGATGAACATTATCCCTCTCCTAGCTATACACCATCTCCATCCCCATCACCACCAATCTATATTCCTGAGAGTCATCTTTCCACAGCT
GTTTCACAATCTGAAAGTGCACCTGTTAGCATACCTGCTACCAAGCATGCTAGTTCTCCCCTGTTGTCCAACAAGCAAAACTTGCCCCCATCTCCACCAC
TCAAAGCTACCACATCTTGCAATCCGAAGACTGATGAAAGTACAGGTTTGGTTCACCCTGGTGCAACAGACGAGAAGTTGTTCTCTCCTCGGAAAGATGA
CATTAGAAAATATGCCAGCGTGAAAACACTATCCAACAGCTCTCAGCAGATTTCATTTTCCAGAACTTCCAGCAGACCTGAGACATTTGATAAAAAAGGC
CATCTATCTGACCCCCTTGAGCCCGGAGGTCTCTTTCCGATTAAAAAATCCCAAGATGCAGCTGTTGGTGCTCTTGTACACACGCTGAAGAAACCCCCAA
CTTTATGCCAAGACTTCTCTGGTTCGGCTGCTTTGCCACCAGATTCTAGGTCCAAAATGTGGAGCTGCAACCTCCAAGAATACAATCCAATCTCTGTAGC
ACCAGCGGGTCAGCAGGCTGCTGTGTCTGGTGTTGCATCTTCAGGTCTCATTGCTTCAAAAACAGCAGCTGATGCATTGGAAGAACTGAAAAGATACGAA
GAAATGAAAGACTTGTTGCTTAGCCAAGCTGGCAGGTCCAACGCTTAA
AA sequence
>Potri.019G010700.9 pacid=42774191 polypeptide=Potri.019G010700.9.p locus=Potri.019G010700 ID=Potri.019G010700.9.v4.1 annot-version=v4.1
MASSNNSTHTEAAEMEQIITEFFPKSLQIILESRSPFMSSRNYSGEQMVSLSPSSSSSSSPSVRPRDKWFNLALRECPAALENLDLWHQSYLEPMIVDVI
LVQVPPVRWDPVNYPPQREPVRNFSTKDQYPFHWNSDQEELGCEGKIEKIVERWEVQYEGRKSRDSGTGSRKLSNTFQTCYMKSILLFRSLYATVRLLPA
YKIFRDLNSSGKIRSYTLTHRVSSFVEPFTREEEAEMQRFVFTPVDTSCGRLCLSVLYHSSLSDVSSESSTPVSPQFIPDYVGSPLAEPVKRFPSLPVSQ
GSLLSLPFSRQHSWYYDHNKASPPSFSFSPSPNRSGKHGSISNPSSCRFQPSSLPPHPPEVPSVHKKNTSFDEHYPSPSYTPSPSPSPPIYIPESHLSTA
VSQSESAPVSIPATKHASSPLLSNKQNLPPSPPLKATTSCNPKTDESTGLVHPGATDEKLFSPRKDDIRKYASVKTLSNSSQQISFSRTSSRPETFDKKG
HLSDPLEPGGLFPIKKSQDAAVGALVHTLKKPPTLCQDFSGSAALPPDSRSKMWSCNLQEYNPISVAPAGQQAAVSGVASSGLIASKTAADALEELKRYE
EMKDLLLSQAGRSNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18770 Autophagy-related protein 13 (... Potri.019G010700
[exp]
0 1
AT1G19220 ARF IAA22, ARF11, A... indole-3-acetic acid inducible... Potri.006G138500
[exp]
1.73 0.8656 Pt-NPH4.2
AT5G66730 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDR... Potri.007G028800
[exp]
2.00 0.8933
AT4G02715 unknown protein Potri.002G050900
[exp]
2.44 0.8485
AT5G08430 SWIB/MDM2 domain;Plus-3;GYF (.... Potri.004G133600
[exp]
3.46 0.8623
AT4G36920 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APE... Potri.007G046200
[exp]
4.89 0.8471 AP2.15,RAP2
Potri.019G057625
[exp]
5.29 0.8485
Potri.013G133550
[exp]
10.39 0.8071
AT3G51950 C3HZnF Zinc finger (CCCH-type) family... Potri.003G204300
[exp]
10.81 0.8466
AT1G13120 EMB1745 embryo defective 1745 (.1) Potri.008G183500
[exp]
10.95 0.8451
AT1G29740 Leucine-rich repeat transmembr... Potri.011G073616
[exp]
19.39 0.7987

Potri.019G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.