Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49180 330 / 4e-113 protein kinase family protein (.1.2) AT3G61960 259 / 8e-83 Protein kinase superfamily protein (.1.2) AT2G37840 258 / 5e-81 Protein kinase superfamily protein (.1.2) AT3G53930 255 / 7e-80 Protein kinase superfamily protein (.1.2) AT2G30360 151 / 7e-43 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT1G12580 152 / 2e-42 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT1G30270 150 / 7e-42 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 149 / 8e-42 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT3G01090 149 / 2e-41 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 146 / 2e-41 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007200 [exp] 553 / 0 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 550 / 0 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.014G107000 [exp] 263 / 2e-83 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 259 / 1e-81 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 258 / 7e-81 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 255 / 7e-80 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G087900 [exp] 151 / 2e-42 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.004G115900 [exp] 151 / 3e-42 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.012G134600 [exp] 151 / 5e-42 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033518 [exp] 383 / 8e-135 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 352 / 3e-120 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10005135 [exp] 270 / 4e-86 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 267 / 6e-85 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 260 / 1e-81 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 258 / 8e-81 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042816 [exp] 147 / 3e-41 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10012696 [exp] 149 / 4e-41 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 150 / 7e-41 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10028115 [exp] 145 / 2e-40 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G011300.3 pacid=42773763 polypeptide=Potri.019G011300.3.p locus=Potri.019G011300 ID=Potri.019G011300.3.v4.1 annot-version=v4.1 ATGGATCTTGAAGCAACAAAGAATCTCTCAGAATCTCACACAACCGGAAACTACATCCTGAAATCAAAACTGGCAGAGAACAAAATAACAGGGGGGGGAG TGGCAGTGAAGCAAGTTTATCTCTCTAAACTCAACAAGAATTTGAGGAACTGCTTAGATTGTGAGCTTAATTTCTTGTCTTCTGTCAATCACACCAACAT CATTCGCCTTCTTGATGTCTTTGAGGATGAATGTTGCATGTTCCTGGTCCTAGAGTTTTGTTCTGGAGGAAATCTATCTTCTTATCTTCAACAACATGGG AGAGTTGAAGAGAAGATTGCTAAAAGATTTACGCAACAGATGGGGGATGGTTTGAAAATTCTGCAGAGCCATCATATCATTCATAGAGACTTGAAACCTG AGAACATTCTCCTTTCTGGCAAGGAGAGCGATGTGGTGCTCAAAATAGCTGATTTTGGTTTATCGAGAAGGGTGCTTCCTGATAACTATGTGGAGACAGT ATGCGGATCTCCATTTTACATGGCTCCAGAAGTTCTTCAATTTCAAAGATATGATTACAAGGTTGACATGTGGAGTGTTGGTGTAATTCTTTTTGAGCTT CTTAATGGCTACCCACCTTTTCGTGGCAGGACTAATTTCCAGTTGCTGCAGAACATCAAGTCAAGTTCATGTCTTCCTTTCTCTCAACACATCCTTTCAG GATTGCATCCGGACTGTGTTGATATATGCTCAAGACTTCTTTCTGCAAATCCAGTTCAACGTCTGTCCTTTGATGAATTCTATCATCATAAGTTCTTGAG AAGAAAAGGGGTGGGGAAGTATCATGGTCAATAA
AA sequence Show only first row Show all	>Potri.019G011300.3 pacid=42773763 polypeptide=Potri.019G011300.3.p locus=Potri.019G011300 ID=Potri.019G011300.3.v4.1 annot-version=v4.1 MDLEATKNLSESHTTGNYILKSKLAENKITGGGVAVKQVYLSKLNKNLRNCLDCELNFLSSVNHTNIIRLLDVFEDECCMFLVLEFCSGGNLSSYLQQHG RVEEKIAKRFTQQMGDGLKILQSHHIIHRDLKPENILLSGKESDVVLKIADFGLSRRVLPDNYVETVCGSPFYMAPEVLQFQRYDYKVDMWSVGVILFEL LNGYPPFRGRTNFQLLQNIKSSSCLPFSQHILSGLHPDCVDICSRLLSANPVQRLSFDEFYHHKFLRRKGVGKYHGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	0	1
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	1.00	0.8385
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	3.46	0.8228
AT5G61040			unknown protein		Potri.015G057600 [exp]	5.00	0.7820
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	6.48	0.7768
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.019G023900 [exp]	6.63	0.7878
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.016G116700 [exp]	6.78	0.7174
AT5G62960			unknown protein		Potri.012G082400 [exp]	9.53	0.7709
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.017G001700 [exp]	11.48	0.7213
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	13.74	0.7618
					Potri.009G144550 [exp]	13.78	0.7407

Compare expression of checked genes

Potri.019G011300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.