Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49180 351 / 2e-120 protein kinase family protein (.1.2) AT3G61960 285 / 4e-92 Protein kinase superfamily protein (.1.2) AT2G37840 288 / 1e-91 Protein kinase superfamily protein (.1.2) AT3G53930 278 / 3e-88 Protein kinase superfamily protein (.1.2) AT1G01140 168 / 2e-48 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G30360 164 / 5e-47 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT1G30270 164 / 1e-46 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 162 / 2e-46 Ca2+regulated serine-threonine protein kinase family protein (.1) AT3G01090 164 / 3e-46 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT1G12580 163 / 3e-46 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007200 [exp] 588 / 0 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 550 / 0 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.014G107000 [exp] 291 / 2e-93 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 285 / 8e-91 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 283 / 4e-90 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 280 / 8e-89 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G115900 [exp] 163 / 3e-46 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 162 / 5e-46 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.018G019900 [exp] 160 / 2e-45 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033518 [exp] 418 / 7e-148 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 368 / 5e-126 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10005135 [exp] 300 / 3e-97 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 298 / 3e-96 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 281 / 6e-89 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 279 / 3e-88 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042816 [exp] 160 / 1e-45 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 159 / 3e-45 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10012696 [exp] 160 / 7e-45 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 162 / 2e-44 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.019G011600.1 pacid=42774569 polypeptide=Potri.019G011600.1.p locus=Potri.019G011600 ID=Potri.019G011600.1.v4.1 annot-version=v4.1 ATGACAAAAACAGAAGAACAAAAATCCAAGGCAAAATATTACTACAACGTTTTCAGTACACTTTTTGTCGACAATCCAAAACCAACAGAAATGGATCTTG AAGCAACAAAGAATCTCTCAGAATCTCACTCAATCGGAAACTACATCCTGAAATCAAAACTGGGTGAGAGCTCTTTTTCCACAGTATGGAAAGCAGAGAA CAAAATAACAGGGGGGGAAGTGGCAGTGAAGCAAGTTTATCTCTCTAAACTCAACAAGAATTTGAGGAACTGCTTAGATTGTGAGCTTAATTTCTTGTCT TCTGTCAATCACCCCAACATCATTCGCCTTCTTGATGTCTTTGAGGATGAATGTTGCATGTTCCTGGTCCTAGAGTTTTGTTCTGGAGGAAATCTAGCTT CTTATCTTCAACAACATGGGAGAGTTCAAGAGAAGATTGCTAAAAGATTTACGCAACAGATGGGGGATGGTTTGAAAATTCTGCAGAGCCATCATATTAT TCATAGAGACTTGAAACCTGAGAACATTCTCCTTTCTGGCAAGGAGAGCGATGTGGTGCTCAAAATAGCTGATTTTGGTTTATCGAGAAGGGTGCTTCCT GATAACTATGTGGAGACAGTATGCGGATCTCCATTTTACATGGCTCCAGAAGTTCTTCAATTTCAAAGATATGATTATAAGGTTGACATGTGGAGTGTTG GTGTAATTCTTTTTGAGCTTCTTAATGGTTACCCACCTTTTCGTGGCAGGACTAATTTCCAGTTGCTGCAGAACATCAAGTCAAGTTCATGTCTTCCTTT CTCTCAACACATCCTTCCAGGGTTGCATCCGGACTGTGTTGATATATGTTCAAGACTTCTTTCTGCAAATCCAGTTCAACGACTGTCCTTTGATGAATTC TATCATCATAAGTTCTTGAGAATAAAAGGGGTGGGGAAGTATCATGGTCAATAA
AA sequence Show only first row Show all	>Potri.019G011600.1 pacid=42774569 polypeptide=Potri.019G011600.1.p locus=Potri.019G011600 ID=Potri.019G011600.1.v4.1 annot-version=v4.1 MTKTEEQKSKAKYYYNVFSTLFVDNPKPTEMDLEATKNLSESHSIGNYILKSKLGESSFSTVWKAENKITGGEVAVKQVYLSKLNKNLRNCLDCELNFLS SVNHPNIIRLLDVFEDECCMFLVLEFCSGGNLASYLQQHGRVQEKIAKRFTQQMGDGLKILQSHHIIHRDLKPENILLSGKESDVVLKIADFGLSRRVLP DNYVETVCGSPFYMAPEVLQFQRYDYKVDMWSVGVILFELLNGYPPFRGRTNFQLLQNIKSSSCLPFSQHILPGLHPDCVDICSRLLSANPVQRLSFDEF YHHKFLRIKGVGKYHGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	3.87	0.9050
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	8.48	0.8930
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	8.71	0.8658	SGR2.1
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.007G080400 [exp]	14.21	0.8395
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	16.24	0.8511
					Potri.005G108850 [exp]	28.14	0.8816
AT4G11970			YTH family protein (.1.2.3)		Potri.001G113500 [exp]	29.39	0.8116
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	34.17	0.8288
AT5G17680			disease resistance protein (TI...		Potri.019G070651 [exp]	35.69	0.8804
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	38.27	0.8912

Compare expression of checked genes

Potri.019G011600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.