Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 443 / 1e-144 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 366 / 2e-114 lectin protein kinase family protein (.1) AT4G00340 331 / 3e-101 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 318 / 2e-96 S-locus lectin protein kinase family protein (.1) AT5G24080 308 / 3e-96 Protein kinase superfamily protein (.1) AT4G32300 296 / 5e-88 SD2-5 S-domain-2 5 (.1) AT5G35370 285 / 2e-83 S-locus lectin protein kinase family protein (.1) AT4G21390 262 / 2e-75 B120 S-locus lectin protein kinase family protein (.1) AT1G61480 257 / 4e-74 S-locus lectin protein kinase family protein (.1) AT1G11350 256 / 1e-73 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007300 [exp] 1471 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 1453 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 1447 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 1126 / 0 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1) Potri.019G011400 [exp] 711 / 0 AT5G60900 395 / 2e-126 receptor-like protein kinase 1 (.1) Potri.019G007400 [exp] 709 / 0 AT5G60900 394 / 4e-126 receptor-like protein kinase 1 (.1) Potri.019G011800 [exp] 707 / 0 AT5G60900 382 / 1e-121 receptor-like protein kinase 1 (.1) Potri.019G007700 [exp] 706 / 0 AT5G60900 394 / 7e-126 receptor-like protein kinase 1 (.1) Potri.005G057000 [exp] 676 / 0 AT5G60900 456 / 5e-150 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004365 [exp] 516 / 1e-171 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 514 / 3e-171 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 496 / 2e-164 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 489 / 1e-161 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 476 / 2e-156 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 463 / 1e-151 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 441 / 6e-143 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 416 / 4e-133 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 375 / 4e-117 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 374 / 7e-117 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.019G011750.1 pacid=42773025 polypeptide=Potri.019G011750.1.p locus=Potri.019G011750 ID=Potri.019G011750.1.v4.1 annot-version=v4.1 ATGGCTTTCGCTTATGCAGCTTTCTTTTTGTTAGTAATTTGTATTTACAAACCTGTAAGTTCCCAGCAGAACCACTCAAACTTGATAAGTTTAGGTTCTT CAATCTCCACCAACGTCCAACCAACTTCATGGCTCTCCCCTTCTGGCACATTTGCCTTTGGGTTCTACCCACAGGGCAGTGGCTTTATAGTGGGAATTTG GTTGGTGGGTAAGCCAGCTGATATAATCACCTGGACAGCATACCGAGATGACCCTCCTGTGCCGTCAAATGCTACGTTGGAGTTAACCGTAAACGGTAAG CTTCTTTTAAGAACTTACTATGCCAACAATGAGGCCGGTGAAGAGAAACTCATTGCTAAGATAGAGAAGTCAGCTTCAAACGCTCGCATGCTTGATTCTG GAAATCTAGTGCTCTGCAATGAACATTCTGAGGTCATTTGGGAGAGTTTCAACTTTCCTACAGATACAATATTAGGAGGCCAGAATCTACATGCAGGGCG CGAACTGCTTTCTAGTGCATCTACAACCAGTTTGTCAACACGAAGGTTTCGTCTTAAAATGCAATATGATGGGAATCTTGTTTTGTATCCCGTAGACACT CCAGATACTTCAGTAGATGCTTATTGGAGCACAGACACTTTTGGGTCCTCTGGTACCCATCTATATTTAAATTATACAGGAGAATTGCTAATCCTTACCA AAACCTCGGGCAAAGTCAAAGCTGTGTTTTACTCTGATTCAGAACCGGAAAGCAGCTCAATTATCTACCGTGCAACATTGGAGTACAATGGAATTTTTCG ATTGTATTCTCATAGCTTCGACAGCAATGGTGTCTACACTACATCTCTTAAGGCTTATGAACCAGAAAGTCAATGCGAAGTGAAGACTTTCTGCGGTCTC AACAGCTACTGCACCATGAACGATGATCAACCTGACTGCCGCTGTCTTCCTGGCACTGTTCCTGTCGATCCCGAACAGAGATATAATGGGTGTGAGAGAA ACTACACTGAACAGTTATGTAAAGTTGCAGAGGAAACATCCTTGTATAACATTACTGATATGGAGAAAATGAGTTGGGATGACTATCCTTATTTTAGAAA CTCCATGTCAGAAGAAGATTGCAGAAAGTCCTGTTTGCAGGACTGTAACTGTGCTGGTGCGCTGTACCAATCTGGGGACTGCAAGAAAGTGAAGTTCCCA GTGAAATATGCTAGGAGATTGGAAGGTGTCTCATCAAGGGTTTTCTTCAAGGTGGGTTTGAAGAGCGTCGAAAGCCGCAACCGATCCATTGCCACTGCAA TGAAGCCTCCAGTGGTCCATAAGACAAGCAAGAAGACAGTGATGGTCATTTGTGTTATGAGCGTAGCATTCATTACGTGCTCTTCAATTGCCATTGCAGT TTCTGTTTTTTTCATCTCTAAGTCAAGAGTTGTTAAGGCCAGAATGCGGTTGGGAAGCGGAAATCTTGGCTTGGCCCATGAGCTCACCCTGAGAGCATTT TCATATCGTGAGCTTAAAAATGCAACCAAGGGTTTCAGGGAAGAGTTGGGAAAAGGATCTTTTGGAGCAGTTTACAAAGGGACATTATACAAAGGTAAAA ATGTTATTGCAGTGAAGAGGCTGGAGAAGTTGGTCAGTGAAGGTGAAAGGGAGTTCCTCACAGAGATGCGTTCGATTGGAAAAACTCATCATAAAAACTT GGTTCGTCTACTTGGTTACTGTACTGAGGACTCGCATAGGCTACTAGTTTATGAATACATGAACAACGGTTCCCTTGCAGATCTTCTCTTCCGAACTGAA AGAATTCCAAATTGGAGTCACAGGGTTAAAATTGCTTTGGATGTTGCTAGAGGGATCCTATATCTACATGAAGAGTGTGAGGCACCAATCATCCATTGCG ATATAAAGCCTCAAAACATTCTAATGGATGATTTTTGGAATGCTAAGATCTCTGATTTTGGGCTAGCAAAATTGCTAGTGCCTGATCAAACAAGAACCTT CACAATAGTCAGAGGGACACGAGGTTACTTGGCTCCCGAATGGCACAAGAACACCCCAATATCAGTGAAGGCAGATGTTTACAGTTACGGAGTTATGCTC TTGGAAATTGTTTTCTGCAGGAGAAATATAGAAGCTAATGTATCAAGACCAGAGGAAGTTCAACTTTCTAATTGGGCATACGAGCTTATGGTTGCAAGAG AATTGGACAAGCTTGATCTTGGCGAAGATGTAGACTTGCAGAATTTGGAGAAAATGGTTATGGTGGGCATGTGGTGTATTCAAGATGAACCAGGTATCCG TCCTTCTATGAAGTCTGTTGTGTTGATGTTAGAAGGAATTACCGATGTATCTGTTCCTCCACATCCAACTTCAGCTTCAGCATAA
AA sequence Show only first row Show all	>Potri.019G011750.1 pacid=42773025 polypeptide=Potri.019G011750.1.p locus=Potri.019G011750 ID=Potri.019G011750.1.v4.1 annot-version=v4.1 MAFAYAAFFLLVICIYKPVSSQQNHSNLISLGSSISTNVQPTSWLSPSGTFAFGFYPQGSGFIVGIWLVGKPADIITWTAYRDDPPVPSNATLELTVNGK LLLRTYYANNEAGEEKLIAKIEKSASNARMLDSGNLVLCNEHSEVIWESFNFPTDTILGGQNLHAGRELLSSASTTSLSTRRFRLKMQYDGNLVLYPVDT PDTSVDAYWSTDTFGSSGTHLYLNYTGELLILTKTSGKVKAVFYSDSEPESSSIIYRATLEYNGIFRLYSHSFDSNGVYTTSLKAYEPESQCEVKTFCGL NSYCTMNDDQPDCRCLPGTVPVDPEQRYNGCERNYTEQLCKVAEETSLYNITDMEKMSWDDYPYFRNSMSEEDCRKSCLQDCNCAGALYQSGDCKKVKFP VKYARRLEGVSSRVFFKVGLKSVESRNRSIATAMKPPVVHKTSKKTVMVICVMSVAFITCSSIAIAVSVFFISKSRVVKARMRLGSGNLGLAHELTLRAF SYRELKNATKGFREELGKGSFGAVYKGTLYKGKNVIAVKRLEKLVSEGEREFLTEMRSIGKTHHKNLVRLLGYCTEDSHRLLVYEYMNNGSLADLLFRTE RIPNWSHRVKIALDVARGILYLHEECEAPIIHCDIKPQNILMDDFWNAKISDFGLAKLLVPDQTRTFTIVRGTRGYLAPEWHKNTPISVKADVYSYGVML LEIVFCRRNIEANVSRPEEVQLSNWAYELMVARELDKLDLGEDVDLQNLEKMVMVGMWCIQDEPGIRPSMKSVVLMLEGITDVSVPPHPTSASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011750 [exp]	0	1
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.016G042700 [exp]	4.47	0.7936
AT4G29905			unknown protein		Potri.008G007800 [exp]	7.48	0.7555
AT2G30620			winged-helix DNA-binding trans...		Potri.008G162300 [exp]	9.69	0.7691
AT4G38040			Exostosin family protein (.1)		Potri.010G197900 [exp]	17.86	0.6948
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G212900 [exp]	21.09	0.7635
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	25.49	0.7240
					Potri.001G029000 [exp]	26.83	0.7639
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G118700 [exp]	44.60	0.7499
AT4G23330			unknown protein		Potri.003G127900 [exp]	45.25	0.7513
AT5G24500			unknown protein		Potri.015G005100 [exp]	54.38	0.6869

Compare expression of checked genes

Potri.019G011750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.