Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 382 / 1e-121 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 336 / 4e-103 lectin protein kinase family protein (.1) AT4G00340 287 / 7e-85 RLK4 receptor-like protein kinase 4 (.1) AT1G61480 246 / 4e-70 S-locus lectin protein kinase family protein (.1) AT1G11340 246 / 2e-69 S-locus lectin protein kinase family protein (.1) AT4G32300 244 / 3e-69 SD2-5 S-domain-2 5 (.1) AT5G24080 235 / 5e-69 Protein kinase superfamily protein (.1) AT1G61550 241 / 3e-68 S-locus lectin protein kinase family protein (.1) AT2G19130 236 / 1e-66 S-locus lectin protein kinase family protein (.1) AT1G11410 235 / 5e-66 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011400 [exp] 1406 / 0 AT5G60900 395 / 2e-126 receptor-like protein kinase 1 (.1) Potri.019G007700 [exp] 1404 / 0 AT5G60900 394 / 7e-126 receptor-like protein kinase 1 (.1) Potri.019G007400 [exp] 1404 / 0 AT5G60900 394 / 4e-126 receptor-like protein kinase 1 (.1) Potri.007G111100 [exp] 1074 / 0 AT5G60900 333 / 1e-103 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 696 / 0 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 695 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007300 [exp] 692 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 688 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 668 / 0 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031805 [exp] 455 / 2e-148 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 446 / 4e-145 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 435 / 9e-141 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 434 / 9e-141 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 429 / 3e-138 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 410 / 3e-131 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 404 / 6e-129 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 357 / 5e-111 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 338 / 2e-103 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10030400 [exp] 305 / 4e-95 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.019G011800.2 pacid=42773225 polypeptide=Potri.019G011800.2.p locus=Potri.019G011800 ID=Potri.019G011800.2.v4.1 annot-version=v4.1 ATGGCTTTGGTATCAGGGCTTCTGCTTCTAATGTTATCTATACTCTTTGTGGAAGCAAGAACTCAACCAAACCAATTTGGTGAAATACACTTAGGTTCTC AGTTATCTCCCATCTCTAACTTACTTTCATGGCAATCCCCTTCAGGCAATTTTGCGTTTGGCTTCTATTCACAGGGAAATGGATTTGCTGTAGGAACATG GATGATGGGTCAACCTAATAACACGGTCATCTGGACTGCAAATCGAGATGATGAACCAGTCTCCTTCAATGCTACAATTCACTTATCAGAAGAGGGTAAG CTACTTCTTCGAACTGAGCAGGGCAATGAAAAGCTTATTGCTAATGTTTCAGAAATCGCAGCTTCAGCTTCAATGCTTGATTCTGGTAATTTCGTGCTTT ACAGTGGTTCTTCTGTTATTTGGCAAAGCTTTGATTACCCAACTGACACCATATTAGTAGGTCAGAATCTTACTGATTTTGATAAATTGGTTTCAAGCGT GTCGAGCTCAAATCACTCCAGTGGAAGGTTTTTCCTCGCGATGCAGGAAGATGGAAACCTTGTCGCCTACCCTACAAACAGCGCTGGTGAATCTGTTGAT GCTTACTGGGCCAGTAGTACTACTGGAGACAACAAGGGGTTGAGTCTCTATCTTAATCAACAGGGATTTCTGTCCATGGATACGGTCTCTAAAAAACCAG TCTTGTTGGCAAGTAGTTCTTATCCCTGTAACAACAAAACAACAATCTTTCGTGCGACGCTTGATGCTGATGGGATTTTCAGGTTGTACTCACACTGCTT AGAGAACAAAACTAGCCGGAGTGTGCATATTGAGTGGTCTGCGTTGAATAATCAATGCAATGTTCATGGCTTCTGTGATTTCAACAGTTATTGCTCTGGC ATGGGCACTAATTTTGACTGTTCCTGTTATCCTGGATTTGCTTTCAATGACCCCAGTGAGAAATTCAGTGGATGCTACAAGAATGTCACTGAAAGTTTTT GCAGAGGCACCAAAGAAGGGGAAATGTACGATGTCAAAGCCGTAGAGAATATATTGTTCGAGCGATTTCCTTATTCTGTCCTACATGTGAAGAAGGAAAA TTGTGGTTTGTCTTGCCTGGAAGATTGTCTCTGTGATGTTGCTCTATATATGAATGAGAAGTGTGAAAAGTATGCTGCACCAATTAGATATGGTTTAAAA GATATAAACATATCATCTATAGCCTTCTTCAAAGTGAAAGCAGCATCTCCTGCTGCACCTCCAATGAGCCCGACAATCATCATAGAAAGCAAGAAAAGTT TACTTGTGTTTCTTGCTATAGCATTCGGCTCTGTTACTTTGTTGTGTTTTGTCATTGCAATCTCTACTTTCTGCGTGTACAGGGATCGAGCTTTTCTTTA CGAAAAGCTATCAGGAATCATAAGCTTGGCTGGAGAGTTTACTCTGCGGTCATTTTCTTATAGTGAGCTTGAGAAAGCTACAAGTGGTTTCATGGAAGAG CTGGGCAGGGGTTCTATTGGTGCAGTTTACAGAGGGACAATACCTGGGGGTGACAGAACTGTTGCTGTTAAGAGGCTTGAGAAAGTTTTAGATGAAGCGG AAAAAAAGTTTCGAGCCGAAATCACAGTTATTGGACAAACTTATCACAGGAACTTGGTTCGGTTGCTTGGTTTTTGTGTGGAGGGCTCTCGGAGGGTTCT CGTCTACGAGTACTTGAAAAATGGCACCCTTGCAGATCTTTTATTCCAGTCTGAGAGGCGCCCCATTTGGAAAGAGAGAGTGAGGATTGCTCTAGATATA GCTAGAGGAATACTCTATCTACATGAAGAGTGTCAAGCCTGCATCATCCATTGCAATATAACCCCTCAAAACATTCTCATGGATGATTCTTGGATAGCCA AAATCTCCGATTTCGGATTATCAAAGCTATTATATCCAGACGAAATAAGAAGCTCGATGGCACTCTCACAGAGTAGAGGGCACTTGGCACCTGAATGGCA GAATAATGCCTTGATGTCGGTAAAAGCTGATATCTACAGCTTCGGAGTTGTACTTCTGGAGGTCATCTGTTGCAGAAGCAGTATAAAAATAGACGTCTCA ACACCAGATGAAATGAATCTTCCCAGTTGGGCATATCAATGCTTTGCAGCTGGACAGTTGGATAAGCTTGTGAAGGAAGAAGTTATAGAATTCGAGTCAC TGGAAAGAATGGTGAAGATTGGACTGCTGTGCGTTCAGCATGATCCAGCTTCACGTCCTTGTATCAAGAATGTGATCTTGATGCTTGAAGGGTCCGATGA CATTCCAGCTCCACCAGCTATAGCTCCATCCCGCATCACCGCTTAG
AA sequence Show only first row Show all	>Potri.019G011800.2 pacid=42773225 polypeptide=Potri.019G011800.2.p locus=Potri.019G011800 ID=Potri.019G011800.2.v4.1 annot-version=v4.1 MALVSGLLLLMLSILFVEARTQPNQFGEIHLGSQLSPISNLLSWQSPSGNFAFGFYSQGNGFAVGTWMMGQPNNTVIWTANRDDEPVSFNATIHLSEEGK LLLRTEQGNEKLIANVSEIAASASMLDSGNFVLYSGSSVIWQSFDYPTDTILVGQNLTDFDKLVSSVSSSNHSSGRFFLAMQEDGNLVAYPTNSAGESVD AYWASSTTGDNKGLSLYLNQQGFLSMDTVSKKPVLLASSSYPCNNKTTIFRATLDADGIFRLYSHCLENKTSRSVHIEWSALNNQCNVHGFCDFNSYCSG MGTNFDCSCYPGFAFNDPSEKFSGCYKNVTESFCRGTKEGEMYDVKAVENILFERFPYSVLHVKKENCGLSCLEDCLCDVALYMNEKCEKYAAPIRYGLK DINISSIAFFKVKAASPAAPPMSPTIIIESKKSLLVFLAIAFGSVTLLCFVIAISTFCVYRDRAFLYEKLSGIISLAGEFTLRSFSYSELEKATSGFMEE LGRGSIGAVYRGTIPGGDRTVAVKRLEKVLDEAEKKFRAEITVIGQTYHRNLVRLLGFCVEGSRRVLVYEYLKNGTLADLLFQSERRPIWKERVRIALDI ARGILYLHEECQACIIHCNITPQNILMDDSWIAKISDFGLSKLLYPDEIRSSMALSQSRGHLAPEWQNNALMSVKADIYSFGVVLLEVICCRSSIKIDVS TPDEMNLPSWAYQCFAAGQLDKLVKEEVIEFESLERMVKIGLLCVQHDPASRPCIKNVILMLEGSDDIPAPPAIAPSRITA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011800 [exp]	0	1
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.002G061400 [exp]	4.47	0.9127
AT3G25020		AtRLP42	receptor like protein 42 (.1)		Potri.011G055200 [exp]	5.47	0.9113
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	6.48	0.9333
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.014G076400 [exp]	8.94	0.9016
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	9.16	0.9052
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	10.90	0.8968
					Potri.005G223450 [exp]	11.61	0.9170
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	12.24	0.8975	RIN4.1
AT5G48370			Thioesterase/thiol ester dehyd...		Potri.014G174800 [exp]	12.96	0.9089
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	13.00	0.8986	Pt-NAC2.1,NAC049

Compare expression of checked genes

Potri.019G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.