Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 313 / 3e-90 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 278 / 7e-78 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 238 / 6e-65 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 228 / 1e-61 RFL1 RPS5-like 1 (.1) AT4G26090 225 / 1e-60 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G43730 221 / 2e-59 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 221 / 4e-59 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G51480 215 / 5e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G63020 211 / 6e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 210 / 1e-55 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011169 [exp] 1910 / 0 AT4G27220 301 / 5e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145532 [exp] 1431 / 0 AT4G27190 266 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.T012000 [exp] 1196 / 0 AT4G27220 314 / 1e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.019G009198 [exp] 1112 / 0 AT4G27220 295 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020500 [exp] 1082 / 0 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 1064 / 0 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020102 [exp] 1016 / 0 AT4G27220 297 / 6e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136301 [exp] 1007 / 0 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1) Potri.T023966 [exp] 1006 / 0 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026132 [exp] 137 / 3e-32 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 136 / 4e-32 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 125 / 1e-28 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 125 / 1e-28 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 120 / 3e-27 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 116 / 9e-26 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 115 / 1e-25 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 108 / 3e-23 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002945 [exp] 105 / 1e-22 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 105 / 1e-22 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G011826.1 pacid=42774084 polypeptide=Potri.019G011826.1.p locus=Potri.019G011826 ID=Potri.019G011826.1.v4.1 annot-version=v4.1 ATGAGTCGACCAAATGATCCTCCTTTTTGGGAATATGTTGAAAAGATGGATGGTGGTGGCATGACGTGTACATTTTGTGGGCATTTTTTTTCCGAAGGTA CTTCCATTACGAGGATCAAATTGCATTTGGCAAGAAAGAAAGGGCGTGGTGTTAAAATTTGTGAAAACGTTCCACCAGAAGTTCATGATGCAGCTTGTGA AGCAGCAGTTGATAATAGCCCTCCAAAAAAGAAACTTAAAACTGTTGCGGGCTCAAGCAGTAACGAGGCCGCTAATGCAATTTCAGCTTCAACGCAAGAA CAGAACAATGAAGTGACGCATGTAGAGATGGCACAACAAGGAGGACCTTTTTTCACTGGAGAACTTGCATGGGCAAATGATTTGATTGGAGCGGCTGAAG TTGTGCAGCTGGAGAGAGGTAGTTCTCATGAGCCTCGAGGAGATTCATCCCGACCAACAGATGATCAACTCTGTTCTCCATCAGTAAACAATGATGCCAA TATGAACGATGTGCAGAACATGGTTGCAGTCAGGATAGAACCAGTACCGGTTCAAGTGTTGGAACAAAGCAATGCAGAACTTGACAGTTTCGCAGGACAT GCTGGAAGGATACAAGTGGGAGTTCATGGCATGGAACAAGGTGCGGAGGAAGAGAGAATTTGTCCGAACTCAGCGGAAAATGGCATGGAAAACACTGGTG ATGGATCTAGTCAGCATTCCAAGAGACTCATAATTGATGCACATTATAATACAGGGGAAGCAACACAAGGAATAGATCTAGCGCAACAATTAGAAGGGAA AACTTGGGATCAGATTAATGCAATCGCTACTTCATTAATGGGGGAGGAGGACGTGGAGAACAATAGTGGAAGATCAGAGCAACCTGGCGCAGGAGCTAGC TCTTCTGGAGGGGTTGCAGGCAACACAAATAAGATTAAAGGAGATGCACTGCCAACGAGAAAAATGGTGGGTCAAGCATTCGAAGAACACAAGAAGACTA TCTCATCTTTGTTGATGCGCAATGAAGTTTCAAGTATTGGCATCTATGGGATGGGCGGAGTGGGAAAGACGGCATTGGTGACACATATACACAATCAGCT TCTAGAAAGACGAGACACTCATGTTTACTGGATTACTGTTTCACAAAATACCAGCATTCATAGATTGCAGACAAGTCTCGCAGGACGAATTGGTTTAGAT CTTTCCAAGGTAGATGAGGAGGTGCATAGAGCGGTAGCGTTGAATAAAGAATTAATGAAGAAACAGAAATGGGTTCTGATTTTAGATGATTTGTGGAAGG CTTTTGACCTCCAAAAGCTGGGAGTTCCTGACCAAGTTGAGGGATGCAAGCTGATTCTTACATCTCGATCAGCAAAGGTTTGTCAACAGATGAAAACCCA ACACACCATCAAAGTGCAGCCTATTTCGGAGAGAGAAGCTTGGACTTTGTTTATTGAGAGACTTGGACATGACAGAGAACTTTCTCCAAAAGTGAAACGA ATTGCTGTGGAAGTTGTAAGGGAATGTGCTGGTTTGCCATTGGGAATTATTACGATGGCAGGAAGCATGAGGGGAGTGGATGAGCCACATGAGTGGAGGA ATACATTGAATAAGTTGAAAGGATCAAAATACAGAGACATGGAAGATGACGTATTCCGGTTGCTGAGGATTAGTTATGATCAGTTGGATAATGATTTAGC ATTACAACAATGTCTCTTATATTGTGCATTGTATCCTGAAGATTATCAGATTGAAAGGGAGGAGCTGATAGGTTATTTGATAGATGAGGGAATAATTGAA GAAATGAGGAGCAGGCAAGCAGCATTTGACGAGGGCCACACGATGCTTGATAAACTTGAAAAAGTCTGTTTATTGGAAAGAGCTTGTTATGGTGATCATA ATACAAGTGTCAAGATGCATGACTTGATTAGGGACATGGCCCACCAAATACTCCAAACAAACTCTCCAGTCATGGTTGGGGGATATTATGATGAATTACC TGTGGATATGTGGAAAGAGAATCTAGTGAGAGTCTCTCTGAAGCATTGTTATTTCAAGGAAATTCCTTCTAGTCATTCACCAAGATGTCCCAATCTTTCA ACTCTATTGCTGTGTGATAATGGACAGTTGAAATTTATAGAAGATTCTTTTTTCCAACATTTGCATGGGCTCAAGGTTCTTGATCTGTCTCGTACAGACA TCATAGAATTGCCTGGTTCTGTCTCTGAACTGGTGAGTCTCACTGCATTATTGCTCGAAGAATGTGAGAATTTAAGGCATGTACCATCATTAGAAAAGCT CAGAGCACTGAAGAGGCTAGATCTCTCTGGTACTTGGGCACTTGAAAAGATACCTCAAGACATGCAATGTCTATCCAACCTGAGGTATCTGAGGATGAAT GGATGTGGTGAAATGGAGTTTCCTAGTGGGATATTACCAATACTCTCTCACCTGCAAGTCTTCATATTAGAGGAGATTGATGATGACTTCATTCCAGTAA CAGTTACAGGAGAGGAAGTAGGATGCTTGAGGGAGTTGGAAAATTTGGTATGCCATTTTGAAGGTCAATCTGACTTTGTGGAGTATCTCAATTCTCGAGA TAAGACTCGATCACTAAGTACATACAGTATTTTCGTAGGACCACTGGATGAATATTGTAGTGAAATAGCTGATCATGGCGGAAGTAAAACAGTTTGGTTG GGTAATTTGTGTAACAATGGAGATGGAGATTTTCAAGTCATGTTCCCAAATGACATTCAAGAACTGTTTATTTTTAAATGTTCATGTGATGTTTCCTCTC TAATAGAGCATTCAATAGAACTGGAGGTCATCCACATTGAGGATTGCAATAGCATGGAGAGCTTGATTTCATCTTCTTGGTTCTGCCCTTCTCCAACACC ATTGTCATCTTATAATGGTGTATTTTCTGGTCTTAAAGAGTTCAATTGCTCTGGATGTAGTAGTATGAAGAAGTTGTTCCCTCTTGTCTTGCTACCAAAC CTCGTAAACCTAGAAAATATTTCAGTTTTTGGTTGTGAGAAAATGGAGGAGATAATAGTTGGAACAAGATCAGATGAAGAAAGCAGCAGCAACAGCACCG AATTCAAACTACCAAAGTTGAGATATCTGGCATTGGAAGATTTACCAGAACTGAAAAGAATTTGTAGTGCAAAATTGATTTGCGATTCTCTCCAACAAAT TGAAGTAAGGAATTGCAAAAGCATGGAGAGCTTGGTTCCATCTTCTTGGATTTGCCTCGTAAACCTAGAAAGGATTATAGTTACAGGATGTGGGAAAATG GAGGAGATAATAGGTGGAACAAGAGCAGATGAAGAAAGCAGCAACAACACCGAATTCAAACTCCCAAAGTTAAGATCGCTGGAATCGGTAGATTTACCAG AACTGAAAAGAATTTGTAGTGCAAAATTGATTTGCGATTCTCTCCGAGAAATTGAAGTAAGGAATTGCAATAGCATGGAGATCTTGGTTCCATCTTCTTG GATTTGCCTCGTAAACCTAGAAAGGATTATAGTTGCAGGATGTGGGAAAATGGATGAGATAATATGCGGAACAAGATCAGATGAAGAAGGGGATATAGGT GAAGAAAGCAGCAACAACAACACCGAATTCAAACTCCCAAAGTTAAGATCTCTGCTATTGTTTGAATTACCAGAACTGAAAAGCATTTGTAGTGCAAAAT TGATTTGTGATTCTCTCGGAACTATTTCAATAAGAAATTGTGAGAATCTGAAGAGGATGCCAATTTGTTTTCCGTTGCTTGAAAATGGCCAGCCATCTCC TCCCCCTTCTCTTACATATATCTATATAGAACCGAAAGAATGGTGGGAGTCTGTAGTGGAGTGGGATCATCCTAATGCTAAGAACATCCTTCGTCCCTTT GTAAAGTTTTTTGGTTGA
AA sequence Show only first row Show all	>Potri.019G011826.1 pacid=42774084 polypeptide=Potri.019G011826.1.p locus=Potri.019G011826 ID=Potri.019G011826.1.v4.1 annot-version=v4.1 MSRPNDPPFWEYVEKMDGGGMTCTFCGHFFSEGTSITRIKLHLARKKGRGVKICENVPPEVHDAACEAAVDNSPPKKKLKTVAGSSSNEAANAISASTQE QNNEVTHVEMAQQGGPFFTGELAWANDLIGAAEVVQLERGSSHEPRGDSSRPTDDQLCSPSVNNDANMNDVQNMVAVRIEPVPVQVLEQSNAELDSFAGH AGRIQVGVHGMEQGAEEERICPNSAENGMENTGDGSSQHSKRLIIDAHYNTGEATQGIDLAQQLEGKTWDQINAIATSLMGEEDVENNSGRSEQPGAGAS SSGGVAGNTNKIKGDALPTRKMVGQAFEEHKKTISSLLMRNEVSSIGIYGMGGVGKTALVTHIHNQLLERRDTHVYWITVSQNTSIHRLQTSLAGRIGLD LSKVDEEVHRAVALNKELMKKQKWVLILDDLWKAFDLQKLGVPDQVEGCKLILTSRSAKVCQQMKTQHTIKVQPISEREAWTLFIERLGHDRELSPKVKR IAVEVVRECAGLPLGIITMAGSMRGVDEPHEWRNTLNKLKGSKYRDMEDDVFRLLRISYDQLDNDLALQQCLLYCALYPEDYQIEREELIGYLIDEGIIE EMRSRQAAFDEGHTMLDKLEKVCLLERACYGDHNTSVKMHDLIRDMAHQILQTNSPVMVGGYYDELPVDMWKENLVRVSLKHCYFKEIPSSHSPRCPNLS TLLLCDNGQLKFIEDSFFQHLHGLKVLDLSRTDIIELPGSVSELVSLTALLLEECENLRHVPSLEKLRALKRLDLSGTWALEKIPQDMQCLSNLRYLRMN GCGEMEFPSGILPILSHLQVFILEEIDDDFIPVTVTGEEVGCLRELENLVCHFEGQSDFVEYLNSRDKTRSLSTYSIFVGPLDEYCSEIADHGGSKTVWL GNLCNNGDGDFQVMFPNDIQELFIFKCSCDVSSLIEHSIELEVIHIEDCNSMESLISSSWFCPSPTPLSSYNGVFSGLKEFNCSGCSSMKKLFPLVLLPN LVNLENISVFGCEKMEEIIVGTRSDEESSSNSTEFKLPKLRYLALEDLPELKRICSAKLICDSLQQIEVRNCKSMESLVPSSWICLVNLERIIVTGCGKM EEIIGGTRADEESSNNTEFKLPKLRSLESVDLPELKRICSAKLICDSLREIEVRNCNSMEILVPSSWICLVNLERIIVAGCGKMDEIICGTRSDEEGDIG EESSNNNTEFKLPKLRSLLLFELPELKSICSAKLICDSLGTISIRNCENLKRMPICFPLLENGQPSPPPSLTYIYIEPKEWWESVVEWDHPNAKNILRPF VKFFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011826 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145572 [exp]	2.64	0.9132
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121900 [exp]	3.46	0.9073
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	4.00	0.8808
AT4G27220			NB-ARC domain-containing disea...		Potri.001G406000 [exp]	4.69	0.8701
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145566 [exp]	7.41	0.8975
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	8.30	0.9003
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	10.39	0.8601
AT5G36930			Disease resistance protein (TI...		Potri.011G015400 [exp]	13.49	0.8823
AT4G27190			NB-ARC domain-containing disea...		Potri.018G136700 [exp]	14.49	0.8854
AT5G01750			Protein of unknown function (D...		Potri.016G131850 [exp]	18.70	0.7942

Compare expression of checked genes

Potri.019G011826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.