Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) AT2G30690 172 / 2e-44 Protein of unknown function, DUF593 (.1) AT1G70750 133 / 8e-32 Protein of unknown function, DUF593 (.1) AT1G74830 122 / 8e-29 Protein of unknown function, DUF593 (.1) AT5G16720 120 / 5e-28 Protein of unknown function, DUF593 (.1) AT1G18990 104 / 4e-23 Protein of unknown function, DUF593 (.1) AT5G06560 69 / 1e-11 Protein of unknown function, DUF593 (.1) AT3G54740 60 / 5e-09 Protein of unknown function, DUF593 (.1.2) AT4G13630 54 / 4e-07 Protein of unknown function, DUF593 (.1.2) AT4G30830 51 / 2e-06 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043400 [exp] 1355 / 0 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 1073 / 0 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 351 / 7e-108 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 246 / 6e-69 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.008G132200 [exp] 160 / 3e-40 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 157 / 4e-39 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 148 / 2e-36 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 148 / 2e-36 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 142 / 4e-35 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006566 [exp] 328 / 6e-98 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 317 / 3e-94 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10024869 [exp] 222 / 5e-61 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 222 / 1e-60 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10014743 [exp] 194 / 8e-52 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10033854 [exp] 193 / 3e-51 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 142 / 2e-34 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10033123 [exp] 116 / 1e-26 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 115 / 2e-26 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 101 / 1e-21 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.019G012200.2 pacid=42773474 polypeptide=Potri.019G012200.2.p locus=Potri.019G012200 ID=Potri.019G012200.2.v4.1 annot-version=v4.1 ATGGCTATCAGCGGGGTTTCATCTGTTAAATCAAAGAAGAGGTCCTGGAGTATCAGCCCTGCATTGACATCTGCTGCTTTGGAATGGTTGCTAATGTGCA TGCTCTTCATCAATGCTATATTCTCGTATTTAATTACAAAATTTGCATGTCAATGGGAGTTGCAAACCCCGTGTTTGCTATGCTCAAGACTGGATCATAT TTTGGGCTCTAAAAAGTTGAAATATTATTGGGATTTGATCTGTGGCAATCATAAGTTAGAGATCTCATCCTTAGTTTTCTGTCACGCTCACAATAATCTT GTCAATGTCCATGGAATGTGTGAAAATTGCCTTTTCTCATTTGCCACAACCAATAAGTCCAATGCTGAAACGTATAGGTTGTTGGTGGGGAAGTTGGGGG AGGATTCTAGCTTTGTTTTAGATCAGGACTCACTACTTGATGGTCATAGCTCAGTTGCTAGACAATGTTCTTGTTGCAATGAACCATGGATTCCAAGAGG ATATTGCCAAAAGCTGATGCGGGCTATATCAGTTGATTCTGGGGCTGCTGATCTTGATGTCCCTTTATCAGGTGCTATTAAACATGACTGCAGCAACCTG AAGAAGAGTAAACAATCTATACCCATCAGAAGTACTCGACAGAAAACTAGTGGGTTTGATCATTTATCTCATGTAGGGTACACCGAACTTAAGTTCAACT CTGATACTGAATCTGAAGTCATGTTGTCTGATGATGATGGCAAAAATGCTGTACACGAAGATATTTCAGTTGGATACGTGAAGCCAGAACCTTGCACTAC CAGTCTACTCGATGATTCTGTTACTGAGAAACTGATCGATCCAGTTTCTTCACCTGAGCCTTCAATTTTGGCTTCAAAGGTGCAATCAGATGCTATCAAC TCGCATACTGTCACAGCAATAGCATCTAGAGTTCCTATTGAGCATGATTTGGAGGAGCTTAATTGGCAACAAGCTGATTGCAAGGCTGATTCCTCTACAC CTCCTGAGCTCATTTCCCATGATAACGTTCCTCCATCACCAATTGCCAGTGACAGCCCTCAAAAAGCATCAAAAGAAAGAGAGATTATTTCTCTAGATGA CGTTCCTCAATCATCAAATGCGAAAGAAACTCCACCGGAAGCATCAGATGAGAACAGGATTATTTCAGTAGACAGTGTTCGTCCATCAACAGAGAGGATA AATCCTGACAAACTTTCACAGGAGAGCGAGCTCATTTCGCTTGTTGATTTCCTTCCATCAACAAATGGAGCAGAAACTCCTGTTCAAGGATTAAAAGAGA GCTGTGTATCCAGAGAAGAGGAAGCTTGGCAGACATCTGTGACAGGCGGTGAGGATCTCTGCAAGGGAGAAAGTCAGCCAGCTAGAAGAACTGACACAGC TTCAGAAATAAACCCTAGTTCTAGTGACAATGGTCAGCACTTTGCAAACTTATTGGATCTCAGTGATGCTTATAAGCTAGCTGTTGGGAATAGGGGAAGG CAGTTGTCTGGTGTTCTTGCTGAACAAAGGGCTGTAAAGGATTCTTCAAGACTTAGCGAAGATTTGAAGCTTTTACTCTCACAACTCTCTGCTGCTAGAG AGCAGTCAATGAATGATATGAGTCCTAGAGTCCCTATGAGTCCCAGAGTACCTATTAGTCCTAAATTATCTATTAACAGTGACGAAGTAAAGACTTCTGA TGCTTCTAGTATCATAGGAATGCAAATTCTTCAAAAGCGAATCACGCTAGAAAGAAATGAGTCTGGTCTATCTTTGGATGGAAGTATTGTCAGTGAAATT GAAGGTGAAAGTGACATTGATCGGTTAAAACGGCAGGTTGAGCATGATAAGAAATTGCTGAGTGCTTTGTACAAAGAACTGGAGGAAGAAAGGAACGCAT CCACAATTGCTGTAAATCAAGCTATGGCCATGATTACTCGAATACAGGAAGAGAAGGCAACACTCCACATGGAAGCTCTGCAGAGCCTAAGAATGATGGA GGAGCAAGCTGAGTATGATATGGAAGCATTGCAAAAAACGAATGACCTTCTCACAGAAAAGGAGAAAGAGGTCCAAGATCTAGAAGAGGAACTTGAGTTT TATAGGAGTAAGTTCCCCAACGAAGCAATCTTTGAGACACCAATTTCTGACAGAAAGGCAACAGGTACGAGAGCGGATCACTCTGAAGCTGGATGTATAG AAGATAGTGCAAGCACCAGTAAAAACTCAGTTGAAGAAAAACAAGTTGAAGGAACGAACACGTCACTTGCGGATAAGAATATCATTACTGTGAATAGTTC ATTGCTTGATTTTGAAGATGAAAAGTCGTATATCACACAAAGTTTGAAGAAGTTGAAAAGGAAGCTTCATCTATTTTCTAATAATGGACTAAGCTTAGAG TTGATCAACAGTGAATATTCTGGAGACAAGGAAAATGACATGAGGGATCTGAATAGCAAAGCGGGAGCTGAACAGAATGGTGGGGCAGAAGAGAGTAAAT TATCAATGACCGATAGAAGAAATGAGCCTGTTCAAGGACCCTTACTAGAGAAATCTTTAGGTTCCACTCAAGAAACTGATCTAAATTCTCTAGTAAATGA AGTTTCTGATCTAAGTCAGAAGGTGGAAGCTCTTGAGGCAGACCAGAATTTCCTTGAGCACAGCATTAACTCAATCAGATATGGAGAGGAAGGGCTTCAA TTCATTCAGGAGATAGCTTCTCACCTGAAAGAATTGCGAAAGATCGGGATACAACAAAGAGAGCAAATCACTGCTTAA
AA sequence Show only first row Show all	>Potri.019G012200.2 pacid=42773474 polypeptide=Potri.019G012200.2.p locus=Potri.019G012200 ID=Potri.019G012200.2.v4.1 annot-version=v4.1 MAISGVSSVKSKKRSWSISPALTSAALEWLLMCMLFINAIFSYLITKFACQWELQTPCLLCSRLDHILGSKKLKYYWDLICGNHKLEISSLVFCHAHNNL VNVHGMCENCLFSFATTNKSNAETYRLLVGKLGEDSSFVLDQDSLLDGHSSVARQCSCCNEPWIPRGYCQKLMRAISVDSGAADLDVPLSGAIKHDCSNL KKSKQSIPIRSTRQKTSGFDHLSHVGYTELKFNSDTESEVMLSDDDGKNAVHEDISVGYVKPEPCTTSLLDDSVTEKLIDPVSSPEPSILASKVQSDAIN SHTVTAIASRVPIEHDLEELNWQQADCKADSSTPPELISHDNVPPSPIASDSPQKASKEREIISLDDVPQSSNAKETPPEASDENRIISVDSVRPSTERI NPDKLSQESELISLVDFLPSTNGAETPVQGLKESCVSREEEAWQTSVTGGEDLCKGESQPARRTDTASEINPSSSDNGQHFANLLDLSDAYKLAVGNRGR QLSGVLAEQRAVKDSSRLSEDLKLLLSQLSAAREQSMNDMSPRVPMSPRVPISPKLSINSDEVKTSDASSIIGMQILQKRITLERNESGLSLDGSIVSEI EGESDIDRLKRQVEHDKKLLSALYKELEEERNASTIAVNQAMAMITRIQEEKATLHMEALQSLRMMEEQAEYDMEALQKTNDLLTEKEKEVQDLEEELEF YRSKFPNEAIFETPISDRKATGTRADHSEAGCIEDSASTSKNSVEEKQVEGTNTSLADKNIITVNSSLLDFEDEKSYITQSLKKLKRKLHLFSNNGLSLE LINSEYSGDKENDMRDLNSKAGAEQNGGAEESKLSMTDRRNEPVQGPLLEKSLGSTQETDLNSLVNEVSDLSQKVEALEADQNFLEHSINSIRYGEEGLQ FIQEIASHLKELRKIGIQQREQITA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	2.23	0.7068
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	3.74	0.6977
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	4.00	0.7522
AT3G12830			SAUR-like auxin-responsive pro...		Potri.005G096400 [exp]	4.79	0.6440
AT5G02090			unknown protein		Potri.006G090100 [exp]	5.19	0.7512
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	11.61	0.6550
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	13.85	0.6431	SOYAP4.1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	14.07	0.6211
AT5G64060	NAC	ANAC103	NAC domain containing protein ...		Potri.005G058900 [exp]	15.55	0.6746
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	16.52	0.6628

Compare expression of checked genes

Potri.019G012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.