Plant FIBer expression Database

Pt-PURE.2 (Potri.019G012300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PURE.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37690 885 / 0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
AT2G05140 213 / 8e-66 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G043500
[exp]
1107 / 0 AT2G37690 867 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042546
[exp]
936 / 0 AT2G37690 907 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
Lus10022004
[exp]
916 / 0 AT2G37690 892 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
Lus10005526
[exp]
288 / 1e-90 AT2G37690 271 / 2e-84 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0224 DHQS PF00731 AIRC AIR carboxylase
CL0179 ATP-grasp PF13535 ATP-grasp_4 ATP-grasp domain
Representative CDS sequence
>Potri.019G012300.3 pacid=42773768 polypeptide=Potri.019G012300.3.p locus=Potri.019G012300 ID=Potri.019G012300.3.v4.1 annot-version=v4.1
ATGCTGCTGCTGCAACAGACAACCCTAGTACCTAAACTCCTACTGTTTTCAAAATCTGATTTCGGTTTCAAGCCTTGTTCTGTTTCCCTTTCAACAAGAT
TATCTTTAATGGACAAACACACCAAGTCCTCTTCGCTAAAACAGTTTCAAAGTCCAGTCTTGGCTTGTCAAGCATCAACTGACACTCACGATACTTCTTT
CCGGAAAGATGACTTGCCAGTTCATGGAGTGTCCGAGGTGATTGTTGGGGTATTGGGAGGTGGGCAATTGGGTCGTATGTTATGCCAAGCAGCTTCAGAA
ATGGCTATTAAAGTCATGGTTTTGGACCCATTGACTAATTGTCCAGCGAGTGCGATTGCATATGATCATATGGTTGGAAGCTTTGATGATAGTGCAACAG
TTCAGGAATTCGCAAAAAGATGTGGAGTGTTGACTGTGGAGATCGAACATGTTGATGCTGCTACAATGGAGAAGCTTGAGCAGCAAGGAGTTGATTGCCA
ACCGAAAGCCTCCACTATTAGAATTATCCAAGATAAGTATCTCCAGAAGGTTCATTTTTCTCGGCATGGGATTCCCCTTCCTGACTTTATGCAGATTGAT
GATCTAGAAGGTGCCAAGAGAGCAGGCGACTTATTTGGCTATCCTCTAATGCTCAAGAGCAAAAGGCTAGCTTATGATGGGCGTGGGAATGCAGTTGCTA
AGAGTGAAGATGAGCTTTCTTCTGCTGTAAATGCTCTTGGAGGATTTGATCGAGGTTTATATGTTGAGAAATGGACATCCTTTGTGAAGGAGCTAGCTGT
CATTGTGGCTAGAGGAAGAGACAATTCCATTTCGTGCTACCCTGTTGTTGAAACTATTCACAAGGAAAACATTTGTCACGTGGTTAAGGCTCCTGCTGAT
ATACCATGGAAGATCAGAAAACTTGCCACTGATGTTGCACATAAAGCTGTTAGCTCATTAGAAGGTGCTGGTGTGTTTGCAGTGGAGTTGTTTTTGACAA
AGGATGGTCAGATCTTACTGAATGAAGTAGCTCCCAGACCTCATAATAGTGGTCATCACACAATTGAGTCCTGCTATACCTCACAATTCGAACAGCATTT
GAGAGCTGTTCTGGGTCTTCCACTTGGTGATCCAGCAATGAAGACTCCTGCTGCTATCATGTACAATATACTGGGTGAAGACGAGGGTGAGCCTGGTTTT
CACTTAGCTCACCAGTTGATTGGAAGAGCATTGAACATACAAGGGGCTTCTGTCCATTGGTATGATAAACCAGAAATGCGAAAGCAACGGAAGATGGGCC
ATATCACTATTGCCGGCCCTTCAATGGGCATAGTGGAAGCACAGTTAAAATCAATGCTGAAGGAAGAAGGTTCTGAGAGTCAGACTGCTGTTAAACCGCG
TGTTGGGATCATTATGGGCTCTGATTCAGATCTTCCTATAATGAAGGATGCTGCAAGGATTTTGACTGTGTTTGGAGTGCCTCATGAGGTGAGAATAGTA
TCAGCCCATCGAACTCCTGAAATGATGTTTTCTTATGCACTGTCTGCTCAAGACCAAGGCATCCAAATCATCATTGCTGGTGCTGGTGGTGCAGCTCACT
TGCCAGGTATGGTAGCTTCGCTGACCCCCTTGCCTGTTATTGGTGTTCCTGTTCGTGCTTCTGCTTTGGATGGAATGGATTCACTCTTATCAATTGTACA
GATGCCAAGGGGAGTACCTGTTGCAACTGTGGCAATTAATAATGCCACAAATGCAGGTTTGCTAGCAGTAAGGATGTTGGGTGTTGGTGATACCGACCTT
TTGGCAAGAATGAGCCAGTATCAAGAAGATACAAGGGACGATGTCTTGAAGAAGGCAGAAAAACTACAAACAGATGGTTGGGAAACTTATTTGAATCCTT
GA
AA sequence
>Potri.019G012300.3 pacid=42773768 polypeptide=Potri.019G012300.3.p locus=Potri.019G012300 ID=Potri.019G012300.3.v4.1 annot-version=v4.1
MLLLQQTTLVPKLLLFSKSDFGFKPCSVSLSTRLSLMDKHTKSSSLKQFQSPVLACQASTDTHDTSFRKDDLPVHGVSEVIVGVLGGGQLGRMLCQAASE
MAIKVMVLDPLTNCPASAIAYDHMVGSFDDSATVQEFAKRCGVLTVEIEHVDAATMEKLEQQGVDCQPKASTIRIIQDKYLQKVHFSRHGIPLPDFMQID
DLEGAKRAGDLFGYPLMLKSKRLAYDGRGNAVAKSEDELSSAVNALGGFDRGLYVEKWTSFVKELAVIVARGRDNSISCYPVVETIHKENICHVVKAPAD
IPWKIRKLATDVAHKAVSSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVLGLPLGDPAMKTPAAIMYNILGEDEGEPGF
HLAHQLIGRALNIQGASVHWYDKPEMRKQRKMGHITIAGPSMGIVEAQLKSMLKEEGSESQTAVKPRVGIIMGSDSDLPIMKDAARILTVFGVPHEVRIV
SAHRTPEMMFSYALSAQDQGIQIIIAGAGGAAHLPGMVASLTPLPVIGVPVRASALDGMDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGVGDTDL
LARMSQYQEDTRDDVLKKAEKLQTDGWETYLNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37690 phosphoribosylaminoimidazole c... Potri.019G012300
[exp]
0 1 Pt-PURE.2
AT1G03110 TRM82, AtTRM82 tRNA modification 82, Transduc... Potri.005G211600
[exp]
1.00 0.8550
AT4G18030 S-adenosyl-L-methionine-depend... Potri.001G146400
[exp]
2.00 0.8087
AT3G56570 SET domain-containing protein ... Potri.004G135700
[exp]
2.44 0.8290
AT1G09800 Pseudouridine synthase family ... Potri.003G008500
[exp]
3.74 0.7952
AT4G11160 Translation initiation factor ... Potri.001G095500
[exp]
5.47 0.7976
AT1G29880 glycyl-tRNA synthetase / glyci... Potri.003G162300
[exp]
5.74 0.8100 GLYRS.2
AT1G72090 Methylthiotransferase (.1) Potri.013G107800
[exp]
7.00 0.7334
AT4G28450 nucleotide binding;protein bin... Potri.007G137300
[exp]
7.07 0.8048
AT1G26460 Tetratricopeptide repeat (TPR)... Potri.010G159100
[exp]
7.48 0.7879
AT3G23940 dehydratase family (.1.2) Potri.003G176600
[exp]
8.83 0.7912

Potri.019G012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.