Plant FIBer expression Database

Potri.019G012483 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G013140
[exp]
155 / 5e-44 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1)
Potri.019G009198
[exp]
152 / 6e-43 AT4G27220 295 / 2e-83 NB-ARC domain-containing disease resistance protein (.1)
Potri.T046051
[exp]
133 / 7e-38 AT4G27220 63 / 1e-10 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G137900
[exp]
133 / 3e-36 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1)
Potri.019G020500
[exp]
131 / 1e-35 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1)
Potri.019G002800
[exp]
130 / 2e-35 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1)
Potri.019G020102
[exp]
126 / 6e-34 AT4G27220 297 / 6e-85 NB-ARC domain-containing disease resistance protein (.1)
Potri.T012000
[exp]
117 / 1e-30 AT4G27220 314 / 1e-89 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145532
[exp]
112 / 4e-29 AT4G27190 266 / 2e-73 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G012483.1 pacid=42773335 polypeptide=Potri.019G012483.1.p locus=Potri.019G012483 ID=Potri.019G012483.1.v4.1 annot-version=v4.1
ATGCTAATTGCCTCTTCAAATGCTATTGACGGTCCAGATGTAAGGGCAGAGTTTGAGAAAGCAGGCATCAACACCCACTTCATTCCCTTTATTAGGAAGG
GACAAGAGCCTAAAGATGTCCAAGATGCAGCCCTTGCAGCAATTGATGGTCCTTCAGAAAAGAAAAAAAAACTTAAAACTGTGGCAGGCTCAAGCAATGA
CGAGGCCACTAATGCAATTTCAGCTTCTGCGCAAGAACAGAACAGTGAAGTGATGGCACAACAAGAAGATGTTCTTTCCTTTGGAGCGTCTGGACATTGG
TTGAGTAGCATCACTGATGAAGAGATTGAACTTCTGGTAGGTAGCTTTCATGAGAGGCCATCAATTAATCAAGCTGAGGAACCTCGAGGAGATTCATCCC
AGCCAACGGATCCATTGTGTCTTGGCCATGGAAGATATTATGATGAACTATGCATGGCTTTAGCCATTAGTGCTAGAGGTTGGGGAGGAGGAGGGAAATG
CGTTTTGATGTATGGTTTTATGTGA
AA sequence
>Potri.019G012483.1 pacid=42773335 polypeptide=Potri.019G012483.1.p locus=Potri.019G012483 ID=Potri.019G012483.1.v4.1 annot-version=v4.1
MLIASSNAIDGPDVRAEFEKAGINTHFIPFIRKGQEPKDVQDAALAAIDGPSEKKKKLKTVAGSSNDEATNAISASAQEQNSEVMAQQEDVLSFGASGHW
LSSITDEEIELLVGSFHERPSINQAEEPRGDSSQPTDPLCLGHGRYYDELCMALAISARGWGGGGKCVLMYGFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G012483
[exp]
0 1
AT4G27220 NB-ARC domain-containing disea... Potri.018G145558
[exp]
3.31 0.8903
AT4G27220 NB-ARC domain-containing disea... Potri.011G127200
[exp]
7.00 0.8950
AT5G36930 Disease resistance protein (TI... Potri.006G283600
[exp]
12.00 0.9010
AT4G27220 NB-ARC domain-containing disea... Potri.019G014374
[exp]
16.49 0.8795
AT4G02550 unknown protein Potri.001G157750
[exp]
17.29 0.8847
AT2G37150 RING/U-box superfamily protein... Potri.008G041201
[exp]
17.88 0.8928
AT2G33060 AtRLP27 receptor like protein 27 (.1) Potri.010G009400
[exp]
18.70 0.8707
AT3G14470 NB-ARC domain-containing disea... Potri.003G025904
[exp]
23.68 0.8645
AT2G03380 Pentatricopeptide repeat (PPR)... Potri.008G092900
[exp]
23.97 0.8722
AT4G02550 unknown protein Potri.012G061366
[exp]
24.73 0.8779

Potri.019G012483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.