Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06137 36 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012700 [exp] 221 / 2e-76 AT2G31335 / unknown protein Potri.019G012400 [exp] 216 / 1e-74 AT2G31335 / unknown protein Potri.019G012900 [exp] 200 / 4e-68 AT2G31335 / unknown protein Potri.019G012702 [exp] 198 / 2e-67 AT2G31335 / unknown protein Potri.019G012601 [exp] 197 / 4e-67 AT2G31335 / unknown protein Potri.013G043600 [exp] 181 / 1e-60 AT1G06135 39 / 3e-05 unknown protein Potri.019G012603 [exp] 157 / 2e-51 AT2G31335 / unknown protein Potri.010G075133 [exp] 84 / 3e-22 AT2G31335 / unknown protein Potri.008G162900 [exp] 76 / 3e-19 AT2G31335 / unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006567 [exp] 61 / 5e-13 ND 35 / 0.001 Lus10041164 [exp] 61 / 6e-13 ND 34 / 0.002 Lus10005525 [exp] 59 / 2e-12 ND 40 / 1e-05 Lus10041163 [exp] 53 / 5e-10 ND 34 / 0.002 Lus10024873 [exp] 50 / 5e-09 ND 37 / 2e-04 Lus10024872 [exp] 48 / 5e-08 ND 39 / 3e-05 Lus10000703 [exp] 40 / 6e-05 AT1G06135 44 / 3e-07 unknown protein Lus10014739 [exp] 37 / 0.0007 ND 40 / 2e-05
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G013000.1 pacid=42773876 polypeptide=Potri.019G013000.1.p locus=Potri.019G013000 ID=Potri.019G013000.1.v4.1 annot-version=v4.1 ATGGGTTCTCAAAGAAAAAACCAATGCTTAACAATGACAATCTTTGTTGCCATTGTTTTTGGACCATGCTCTCACCAAATATTGGCAGCTAGGCCATTAG AGGGAGAGCAATGGTTAAAGCAAAATCTTGGGAATATTCAATCTCTTCGAAGGGGTCCGGTTCCACCATCTGGTGGATCTTCATGCACTCATATTCCTGG CCGTGGTAGTGGCCATTGCCCCTTGGGTGAAATGAATTTTGCTGGCCATATTGTTGCTCATGCACCACCTGCTTTTCCTGATGCCATCGTAAAGTTTGCT GCGGCTTCAGTCACTAATAATGAGACCCAAAAACAAGATTCAAGCTCATGA
AA sequence Show only first row Show all	>Potri.019G013000.1 pacid=42773876 polypeptide=Potri.019G013000.1.p locus=Potri.019G013000 ID=Potri.019G013000.1.v4.1 annot-version=v4.1 MGSQRKNQCLTMTIFVAIVFGPCSHQILAARPLEGEQWLKQNLGNIQSLRRGPVPPSGGSSCTHIPGRGSGHCPLGEMNFAGHIVAHAPPAFPDAIVKFA AASVTNNETQKQDSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31335			unknown protein		Potri.019G013000 [exp]	0	1
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Potri.013G148500 [exp]	13.30	0.6413
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	24.97	0.6482
AT5G37490			ARM repeat superfamily protein...		Potri.008G137700 [exp]	26.88	0.7176
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	45.60	0.6618
AT4G13810		AtRLP47	receptor like protein 47 (.1.2...		Potri.012G019850 [exp]	51.61	0.6200
AT2G23770			protein kinase family protein ...		Potri.014G040000 [exp]	75.31	0.6635
AT2G20562			unknown protein		Potri.011G114600 [exp]	89.43	0.6146
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G026600 [exp]	91.43	0.6280
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	155.17	0.5942
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	208.49	0.5900	PtrCSLD1,CESA3.2

Compare expression of checked genes

Potri.019G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.