Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35370 751 / 0 S-locus lectin protein kinase family protein (.1) AT4G32300 447 / 2e-144 SD2-5 S-domain-2 5 (.1) AT1G34300 322 / 5e-97 lectin protein kinase family protein (.1) AT5G24080 273 / 1e-82 Protein kinase superfamily protein (.1) AT2G19130 282 / 2e-82 S-locus lectin protein kinase family protein (.1) AT4G00340 267 / 5e-77 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 239 / 3e-70 Protein kinase superfamily protein (.1) AT1G23540 228 / 1e-63 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G56120 231 / 2e-63 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 231 / 2e-63 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086500 [exp] 823 / 0 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.018G027300 [exp] 444 / 3e-143 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 441 / 3e-142 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G119200 [exp] 322 / 7e-97 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G115800 [exp] 321 / 7e-97 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G121000 [exp] 311 / 7e-93 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G061900 [exp] 311 / 4e-92 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.014G086900 [exp] 308 / 1e-91 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.013G149500 [exp] 303 / 3e-90 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028067 [exp] 704 / 0 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 441 / 1e-141 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 437 / 2e-140 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 398 / 4e-126 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10025617 [exp] 385 / 2e-123 AT5G35370 469 / 2e-156 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 303 / 1e-89 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 298 / 2e-88 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 296 / 7e-88 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10028711 [exp] 275 / 8e-82 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 278 / 1e-80 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.019G013797.1 pacid=42773102 polypeptide=Potri.019G013797.1.p locus=Potri.019G013797 ID=Potri.019G013797.1.v4.1 annot-version=v4.1 ATGGGCTCCTCCTTCTTGTTCCTCTTCTTTTCTTCCACACTGCTTCCTTATCTCTGCATCTCAGGCCCCAGCACTGTTCAAACCATCAAACAACCCTTCA CTGCTTCACATTTTTTCTTCATTGACCAGTCTGGTGTTTTCTTGATCTCTTCTAATGGCAACTTCACAGCCTCCATATCCAATTCCGAAGAGAATCCTCC ATATTATTTCTGTATCACTCATGTTAAGTCCAATGCTATCATTTGGATAGCTAACAGGAACCACCCCATTTCAGATTCTGATAAGCTATATTTGACTACA AATGGTCTTGCCATTAATAGTACTTATAATTCTAGTACTACATCTGTAGTTTGGTCAACGGAAGGATTAAGCCCAAGCTCTCAGGTTTCTGCTATGGAGC TTCGGGATTCAGGAAACCTTGTACTACTTAACAGGAACAATGTTTCTTTATGGGAGAGTTTTGATCAACCAACTGATACTATTGTCATGGGACAGAGTTT GGCTGTTGGGACATCAGTGGACTGTTATAACGCTGAGAATGACATGTCAGTTGGTGACTACAGGCTTGTAGTGACTGGTGGTGATGCTGTTTTGCAGTGG AATGGAATGAGTTATTGGAAGCTATCAATGGAGCCAAAAGGTTCACAGGATTCAAAGGTGCCTGTCTCATTTTTGGCCTTGAATGATACAGGTTTGTTTT TGCTTGGAAGTGATAGATCAACTGTTGTGATTAAGCTTACTTTGGGCCCTGCAGATTTTAGAGTTGCCAAGTTAGGGTTTGATGGGAAGCTTAGTGTTAG AAAATTTGTTGATCAAAATTGGGTGCAGGAATTTGTGAGCCCTGCTGATGAATGTCAGATTCCTCTCAGTTGTAACAAAATGGGGTTATGCAGTTCAGGA AGATGCTCTTGTCCACCAAATTTCCATGGTGATCCTCTTTCAAAAAGTGGCTGCACGCCGACAGATGCTTCACTTGCTTTGCCTTCAGGTTGTAGTAATG GAAAAGAATTGAATTCTTCTGTTTTCTATGTCAATTTAGGCTCTGAATTAGACTATTTTGCTAATGGTTTTATGGCTCCTGCTAAACGGGATATCAATTT ATTAGCTTGCCAAGATCTTTGCACCCGAAATTGTTCTTGTTTAGGCATCTTCTATGGAAATTCCTCAGGTTCTTGTTATCTTCTTGAAAACCCTTTGGGG TCTATCATGGAAGCCTCTAGCTCCAACAGCAAACGGTTAGGCTACGTGAAGACTATAGTTGTATCTTCGCGTGCAAACAAAGTGAATGAATCTGCAAAAT TTCCAATTGTAGGTTTGGTTCTATTACCTTCATCTGGAATCCTTTTGATTATCATTGTTGTTTTAGGGTTCATTTGTTGGAGAAGGAATAGACTGTATAG AACTGCTAAGTTGAAATTAGGCCGTGGCGATTCTTCTTCATCTGAGCTTGAGATAATTTCTATCCCGGGTTTGCCAGTAAGGTTTAATTATGAAGACCTT GTGGCTGCAACAGAAAGTTTCAGCACTCAAATTGGTAGTGGCGGCTTTGGAACCGTGTACAAAGGCACTCTGCCTGACAAATCCGTTGTGGCAGTCAAGA AGATTACCAATGTTGGTGTGCAAGGAAAGAAGGAATTCTGCACCGAAATTGCGATTATAGGAAGCACTCGTCATGTTAATCTTGTTAAATTGAAAGGGTT TTGCGCACAAGGGAGACAGAGGTTTCTGGTATATGAGTACATGAACAGAGGCTCACTGGACAGAACGCTCTTTGGTAATGGACCTGTTTTGAAGTGGCAA GAAAGGTTTGAGATTGCTCTTGGAACCGCAAGGGGACTTGCTTACTTGCATAGTTATTGTGAGCGCAAGATCATCCATTGTGATGTGAAGCCAGAGAACA TTCTTTTGCATGACAATTTACAGGTTAAAATCTCCGATTTCGGGCTTTCGAAGCTGCTAACCCCTGAACAATCCAGTCTCTTCACTACAATGAGAGGGAC ACGAGGCTATCTTGCACCAGAATGGCTAGCGGGCGTTACGATCTCAGATAAAGCTGATGTTTATAGTTATGGAATGGTATTGCTAGAAATTGTAAGGGGA AGGAAAAACAGCGCAGCACAGCCGCAAAGCCGAAGCATAGAAAACGATAGCAGCGAAGGAAATGGAACATCTTCATCCTCTTCAGGTTGGGAACCTAGGT CTGCGTATTTCCCCCTACACGCGCTAGAAATGCATGAGAAAAAAAGGTACTCGGAGCTTGCAGACTCCAGGCTAGAAAGACGGGTGGCGAACGAGGAGGT TGAGAAGCTAGTGAAGGTGGCCTTGTGCTGTTTACATGAAGATCCTACGCTGAGGCCAACAATGGTTAATGTTGTTGGCATGTTGGAAGGTATAACTCCT TTGGCTGAGCCAAGGCAGGAATCATTAAATTTCTTGAGATTCTATGGCAGGAGGTTCAGTGAGGCGTCTAGAATTGAAGGGTCTAATGAGCGAAATGAGT TTGGTTTGTTCCCTCAAGCAAACCTCACTAGTGGCACCAGTAGTTCTTACACCTCAATGTCTTACTTGTCTGCACAACAGCTTTCTGGTCCTAGATAA
AA sequence Show only first row Show all	>Potri.019G013797.1 pacid=42773102 polypeptide=Potri.019G013797.1.p locus=Potri.019G013797 ID=Potri.019G013797.1.v4.1 annot-version=v4.1 MGSSFLFLFFSSTLLPYLCISGPSTVQTIKQPFTASHFFFIDQSGVFLISSNGNFTASISNSEENPPYYFCITHVKSNAIIWIANRNHPISDSDKLYLTT NGLAINSTYNSSTTSVVWSTEGLSPSSQVSAMELRDSGNLVLLNRNNVSLWESFDQPTDTIVMGQSLAVGTSVDCYNAENDMSVGDYRLVVTGGDAVLQW NGMSYWKLSMEPKGSQDSKVPVSFLALNDTGLFLLGSDRSTVVIKLTLGPADFRVAKLGFDGKLSVRKFVDQNWVQEFVSPADECQIPLSCNKMGLCSSG RCSCPPNFHGDPLSKSGCTPTDASLALPSGCSNGKELNSSVFYVNLGSELDYFANGFMAPAKRDINLLACQDLCTRNCSCLGIFYGNSSGSCYLLENPLG SIMEASSSNSKRLGYVKTIVVSSRANKVNESAKFPIVGLVLLPSSGILLIIIVVLGFICWRRNRLYRTAKLKLGRGDSSSSELEIISIPGLPVRFNYEDL VAATESFSTQIGSGGFGTVYKGTLPDKSVVAVKKITNVGVQGKKEFCTEIAIIGSTRHVNLVKLKGFCAQGRQRFLVYEYMNRGSLDRTLFGNGPVLKWQ ERFEIALGTARGLAYLHSYCERKIIHCDVKPENILLHDNLQVKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLAGVTISDKADVYSYGMVLLEIVRG RKNSAAQPQSRSIENDSSEGNGTSSSSSGWEPRSAYFPLHALEMHEKKRYSELADSRLERRVANEEVEKLVKVALCCLHEDPTLRPTMVNVVGMLEGITP LAEPRQESLNFLRFYGRRFSEASRIEGSNERNEFGLFPQANLTSGTSSSYTSMSYLSAQQLSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35370			S-locus lectin protein kinase ...		Potri.019G013797 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.005G035200 [exp]	6.92	0.9182
AT1G17860			Kunitz family trypsin and prot...		Potri.017G153466 [exp]	9.53	0.8993
AT1G29760			Putative adipose-regulatory pr...		Potri.003G025975 [exp]	9.89	0.8416
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283866 [exp]	10.00	0.9145
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283208 [exp]	10.67	0.9127
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.003G080600 [exp]	12.00	0.9107
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029700 [exp]	14.00	0.9111
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	14.28	0.9264
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	20.49	0.8991
AT1G21326			VQ motif-containing protein (....		Potri.002G070600 [exp]	23.45	0.8891

Compare expression of checked genes

Potri.019G013797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.