Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54560 2619 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 2550 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G20490 2255 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 2082 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT5G43900 1901 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 1892 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G31900 1867 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G28710 1856 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1671 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT4G33200 1592 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043900 [exp] 2906 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G199200 [exp] 2344 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G145700 [exp] 2329 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.002G254300 [exp] 2006 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.009G025300 [exp] 1989 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 1979 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1903 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 1645 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1441 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005521 [exp] 2683 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10003315 [exp] 2279 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 2232 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 2137 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 1977 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1668 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1627 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 1508 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10014753 [exp] 1258 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038072 [exp] 1163 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF01843 [poplar] [flax] DIL DIL domain CL0010 [poplar] [flax] SH3 PF02736 [poplar] [flax] Myosin_N Myosin N-terminal SH3-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G013800.2 pacid=42773065 polypeptide=Potri.019G013800.2.p locus=Potri.019G013800 ID=Potri.019G013800.2.v4.1 annot-version=v4.1 ATGGGAAGTAAGGAGAATATAATTGTAGGTTCTCATGTTTGGGTTGAAGACCATGAGTTGGCTTGGCTTGATGGGAAGGTATCAAAGATTACTGGACAGG ATGCCGAGATCGAAGCTTCAAATGGGAAGAAGGTCACGGCAAAATTATCGAAAATATATCCGAAAGATATGGAAGCTCCTGCTGGTGGAGTTGATGACAT GACAAAGCTTTCTTACTTGCACGAGCCTGGAGTTCTGGAGAACCTGAAAACAAGATATGAGCTGAATGAAATCTATACGTATACTGGAAATATTCTTATT GCCATCAATCCATTTCAAAGACTGCCCCATCTCTATGATGGTCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGTCCTCATGTTTTTG CGGTTGCTGATGTTTCATACAGGGCAATGGTCATTGAAGGGAAGAGCAATTCCATTTTGGTCAGTGGTGAAAGTGGTGCGGGTAAAACCGAGACCACGAA AATGCTTATGAGGTACCTTGCATTTTTAGGCGGTCGAGCTGCCACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTCCTTGAAGCA TTCGGGAATGCTAAAACTGTTAGAAATAACAATTCCAGCCGTTTTGGTAAATTTGTTGAGATCCAGTTTGACAAGCACGGAAGAATTTCTGGAGCTGCCA TCAGAACTTACCTTCTAGAGAGATCTCGTGTTTGCCAAGTTTCCAATCCTGAGCGCAACTACCATTGTTTTTACCTTCTTTGTGCCGCACCACAGGAGGA AATAGAGAGGTATAAGTTGGGGAGCCCAAAATCATTCCACTATCTTAACCAGTCAACTTGCTTTGAACTAGTTGGTGTAAGCGATGCGCATGACTACCTT GCCACAAGAAGAGCTATGGATATTGTTGGAATAAGTGCAAGGGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCAGTCCTTCATATTGGAAATATTGATT TTGCTAAGGGAAAGGAAGTTGATTCATCGGTACCTAAAGATGATCAATCTAAATTCCATCTCAAAACAACTGCGGAGCTGCTAATGTGTGATCCTGTTGC CTTGGAAGATGCATTATGCAAGCGTGTCATGATCACTCCCGAGGAGGTTATCAAGCGAAGTCTTGATCCTCAAAGTGCGGTGATTAGCAGGGATGGTTTA GCTAAGACGATTTATTCTCGTTTATTTGATTGGATAGTGGATAAGATTAATAATTCCATTGGACAAGATCCTAACTCAAAATCTCTGATTGGCGTCCTCG ACATCTACGGTTTTGAAAGCTTCAAGACAAATAGCTTTGAGCAGTTCTGTATTAATTACACAAACGAGAAGTTGCAGCAGCATTTCAACCAGCACGTCTT CAAAATGGAACAAGAGGAATACACAAAAGAGCAGATTGATTGGAGCTACATTGAGTTTGTCGATAATCAAGATGTCTTGGATCTTATTGAAAAGAAACCA GGTGGGATAGTAGCTCTCCTTGATGAAGCTTGCATGTTTCCCAAGTCGACACATGAAACATTTTCAAACAAGCTTTATCAAACATATAAAGTTCACAAGC GCTTTATCAAGCCAAAATTGTCTCGCACGGATTTCACCATTGCTCATTATGCTGGAGAGGTCCAGTATCAATCCGACCACTTTTTGGACAAGAACAAAGA CTATGTAGTTCCCGAACATCAAGATTTGTTGGGTGTTTCCAAATGTCCTTTTGTAGCAGGTCTTTTCCCTCCACTTCCAGTAGAGACAAGCAAATCTTCA AAGTTCTCTTCGATTGGTTCTCGTTTTAAGCTACAACTTCAACAACTAATGGAAACATTAAATTCTACTGAACCTCACTACATAAGATGTGTTAAGCCAA ACAATCAGCTAAAACCTGCCATATTTGAGAATATCAATATCATGCAGCAATTGCGTTGTGGTGGTGTTTTAGAAGCAATCCGAATTAGTATGGCTGGATA CCCTACTCGTCGCCCTTTCTTTGAATTCGTAAATCGATTTGGACTTCTTTTCCCCGAGGCTTTGGCAGGAAGCTATGACGAAAAGGTTGCTTGCAAAAAG ATTTTGGAAAAGAAGGGACTTCAAGGGTTCCAGATAGGTAAAACTAAGGTATTCTTGAGAGCTGGTCAGATGGCTGAATTGGATGCAAGAAGAGCTGAGG TACTCAACAATGCAGCAAAAACCATCCAGGGGTGTGTACAGACGCATTATGCTCGTAAAAGGTTTATTGCGTTGCGGAAGGCTACTGTATTGGTGCAATC ACTATGGAGAGGAAGACTGGCTTGCAAAATTTTTGACAGAATGAGGAGGGAGGCAGCTGCTATAAAAATTCAGAAGCATACACGTAAATATGCAGCCAGA ACAGCCTACAAGAAACTTCATGTATCTGCACTTGTCGTGCAAACAGGTTTAAGAGCTATGATTGCTCGCAAGGAATTCAGATTTAGGAAACGAACTAAAG CTGCAACCATTATCCAGGCCCGGTGGCGCTGTCATAAAGCTGTTTCCTACTATAAGAGGCTAAAGAGAGGTGCAGTTGTCACACAAACAGGATGGAGGTG TAGAGTTGCTAGAAGAGAGCTAAGGTTGCTCAAAATGGCTGCAAGAGACACCGGCGCACTAAGAGAAGCCAAAGACAAGCTTGAAAAACATGTAGAGGAA CTCACATGGCGTTTACAACTCGAAAAACGATTAAGGACCGATTTGGAAGAAGCAAGAGCGCAAGAGGCAGTGAAATTCCAGAATTCATTGGAAGAAATGA AAATTAAAATAGAAGAAGCCAATGCTTTGATAGTCAAGGAGAGGGAGGCTGCAAAGAATGCTATTAATGAGGCACCTCCTGTAATTAAAGAAACTCAAGT ACTCGTTGAAGATACTAAGAAAATTGATTCTCTAACAGACGAAGTAGAAAACCTAAAGGTCACGTTAGATTATGAGAAACAAAGAGCTGATGATACTCAA AAGAAATACAGTGAAGTACAAGAGATTAGCGAAGAAAGACGGGTGAAATTGGAAGAGACGGAGAAAAAGGTTCAACAACTTCAGGAATCCTTGCAAAGGC TAGAAGAGAAACTTACCAATTTAGAGTCGGAGAATAAAGTCCTACGGCAACAGGCTCTGTCCATGGCACCCAACAAGTTCCTCTCAGGACGCTCCAGATC AGTAATGCAGAGGGTTGAAAGTCATATTCCAGTTGATGCTGCAAGAACAAGTTTGGATCTGCAGAGCCCTTCAGTGAACCACAGGGAGCACTCTGAAGTA GATGATAAACCACAGAAGTCATTAAATGAGAAACAACAGGAGAACCAGGAGTTGCTCATTCGTTGCGTCGCACAACACCTAGGCTTTGCAGGGAATAGAC CTATAGCTGCTTGTATCATATACAAGTGCCTTTTGCAGTGGAGATCATTTGAAGTTGAGCGAACCAGTGTGTTTGATCGGATCATCCAGACCATAGGCCA TGCTATTGAGACCCAGGATAACAATGATAGCTTGGCCTATTGGTTATCCAATGCCTCAACACTTCTCTTACTGCTTCAACGTACATTGAAAGCAAGTGGT GCAGCAGGAATGGCTCCACAGCGCCGACGATCATCATCAGCTACTATATTTGGAAGAATGACACAGAGTTTCCGTGGAGCTCCACAAGGAGTCAATCTAT CCTTGATCAATAATGGTGGAGTGGACACTTTGCGGCAAGTTGAAGCCAAGTACCCCGCTTTGCTTTTCAAGCAGCAGCTTACAGCATATGTAGAAAAAAT TTATGGAATGATTCGGGATAATCTGAAGAAAGAAATATCTCCTTTGCTTGGATTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTAGTGAAGGGG GCACGCTCAGTAGCCAACACTGCAGCCCAGCAAGCCCTGATTGCTCACTGGCAAGGGATTGTGAAGAGCCTTGGAAACTTCTTAAGCACTTTGAAATCTA ATCATGTACCCCCATTTTTAGTTCGTAAGGTGTTCACGCAGATATTTTCCTTCATCAATGTTCAACTATTCAACAGCCTTCTATTAAGAAGAGAATGCTG TTCATTTAGCAATGGTGAATATGTTAAAACTGGGTTGGCCGAATTGGAGCACTGGTGTTACAACGCAACAGATGAGTATGCAGGTTCATCCTGGGATGAG CTCAAGCATATTAGACAGGCTATCGGGTTTCTGGTTATTCATCAGAAGCCGAAGAAAACTTTGGATGAGATAAGCCATGACCTGTGCCCGGTTCTAAGTA TCCAGCAGCTATACCGTATCAGTACCATGTACTGGGATGACAAGTACGGCACACACAGTGTGTCCACCGATGTTATATCGAATATGAGGGTGCTGATGAC GGAAGATTCGAATAATGCAGTTAGCAGTTCTTTCCTGCTGGATGATGATTCAAGCATTCCATTTTCAGTTGATGACTTATCAAAGTCCATGGAACAAATT GACATTGCTGACATTGAACCACCACCTCTGATTCGCGAGAACTCGGGCTTTAGTTTCTTGCTGCCGCGCATCGAATAA
AA sequence Show only first row Show all	>Potri.019G013800.2 pacid=42773065 polypeptide=Potri.019G013800.2.p locus=Potri.019G013800 ID=Potri.019G013800.2.v4.1 annot-version=v4.1 MGSKENIIVGSHVWVEDHELAWLDGKVSKITGQDAEIEASNGKKVTAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLENLKTRYELNEIYTYTGNILI AINPFQRLPHLYDGHMMQQYKGAPFGELSPHVFAVADVSYRAMVIEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEA FGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSNPERNYHCFYLLCAAPQEEIERYKLGSPKSFHYLNQSTCFELVGVSDAHDYL ATRRAMDIVGISAREQEAIFRVVAAVLHIGNIDFAKGKEVDSSVPKDDQSKFHLKTTAELLMCDPVALEDALCKRVMITPEEVIKRSLDPQSAVISRDGL AKTIYSRLFDWIVDKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKP GGIVALLDEACMFPKSTHETFSNKLYQTYKVHKRFIKPKLSRTDFTIAHYAGEVQYQSDHFLDKNKDYVVPEHQDLLGVSKCPFVAGLFPPLPVETSKSS KFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNQLKPAIFENINIMQQLRCGGVLEAIRISMAGYPTRRPFFEFVNRFGLLFPEALAGSYDEKVACKK ILEKKGLQGFQIGKTKVFLRAGQMAELDARRAEVLNNAAKTIQGCVQTHYARKRFIALRKATVLVQSLWRGRLACKIFDRMRREAAAIKIQKHTRKYAAR TAYKKLHVSALVVQTGLRAMIARKEFRFRKRTKAATIIQARWRCHKAVSYYKRLKRGAVVTQTGWRCRVARRELRLLKMAARDTGALREAKDKLEKHVEE LTWRLQLEKRLRTDLEEARAQEAVKFQNSLEEMKIKIEEANALIVKEREAAKNAINEAPPVIKETQVLVEDTKKIDSLTDEVENLKVTLDYEKQRADDTQ KKYSEVQEISEERRVKLEETEKKVQQLQESLQRLEEKLTNLESENKVLRQQALSMAPNKFLSGRSRSVMQRVESHIPVDAARTSLDLQSPSVNHREHSEV DDKPQKSLNEKQQENQELLIRCVAQHLGFAGNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDSLAYWLSNASTLLLLLQRTLKASG AAGMAPQRRRSSSATIFGRMTQSFRGAPQGVNLSLINNGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKG ARSVANTAAQQALIAHWQGIVKSLGNFLSTLKSNHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELEHWCYNATDEYAGSSWDE LKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSTDVISNMRVLMTEDSNNAVSSSFLLDDDSSIPFSVDDLSKSMEQI DIADIEPPPLIRENSGFSFLLPRIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	0	1
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	1.00	0.7676
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	3.46	0.6572
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123001 [exp]	3.74	0.5470
					Potri.008G012050 [exp]	8.48	0.5665
					Potri.001G054301 [exp]	8.94	0.6291
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Potri.006G187600 [exp]	9.38	0.6256
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	13.03	0.5663
					Potri.013G104501 [exp]	17.29	0.5478
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	17.97	0.5391
AT4G16447			unknown protein		Potri.011G086300 [exp]	28.72	0.4974

Compare expression of checked genes

Potri.019G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.