Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03970 397 / 3e-136 F-box associated ubiquitination effector family protein (.1.2) AT5G07610 64 / 7e-11 F-box family protein (.1) AT1G12855 61 / 8e-10 F-box family protein (.1) AT3G10240 54 / 7e-08 F-box and associated interaction domains-containing protein (.1) AT3G49510 52 / 5e-07 F-box family protein (.1) AT3G17280 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT4G17200 47 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT1G47390 46 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT3G17570 45 / 6e-05 F-box and associated interaction domains-containing protein (.1) AT3G17540 45 / 9e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038000 [exp] 69 / 8e-13 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G254000 [exp] 69 / 2e-12 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.005G043500 [exp] 68 / 2e-12 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.010G224400 [exp] 67 / 8e-12 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.013G065500 [exp] 66 / 1e-11 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.015G028500 [exp] 63 / 9e-11 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.003G215900 [exp] 57 / 9e-09 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.018G132800 [exp] 57 / 1e-08 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.007G037500 [exp] 56 / 1e-08 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042547 [exp] 503 / 9e-179 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2) Lus10022006 [exp] 494 / 4e-175 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2) Lus10037892 [exp] 57 / 1e-08 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10037467 [exp] 50 / 2e-06 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003922 [exp] 50 / 2e-06 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10040838 [exp] 48 / 1e-05 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10015048 [exp] 46 / 5e-05 AT5G07610 74 / 3e-14 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.019G013900.2 pacid=42773867 polypeptide=Potri.019G013900.2.p locus=Potri.019G013900 ID=Potri.019G013900.2.v4.1 annot-version=v4.1 ATGAAGAAGAAAAAGAAGATGAGGAGTGGTATTGATGGTGTAAATGCTGCCTTGAGCTCTGATGACATCCTATGTGAGATCCTCCTTCGGGTGCCACCAG AAACTGTTTTTAGTTTAATCATAGTATCGAAGAGGTGGCTTCATGTTATCTGCAGCTCTGTTTTTTGTCAACATTATCTGAGACGATGGCCACTGGCTTA TCGCATGTTGGGCTTCTTTGTGTGCAATAATTTGTACCTTGGGAGAGGTCAAAATGGTGTGCGCCGACCACGAACAGAACCTGCTATGCCATTATTGTCA ACTTGTAAAGAGGGTGATGACTTGAAGTTCTCTAAGACCCTCAAGCAGTATGGCTACTTCATTGACTCTTCCAATGGCCTTCTTCTTTGCGGTCGCCACC CAAAGAGATATTTTGTTTGGAATCCCATTACCAAACAACACTACAAAATTCCTAAGCCTCGGGTATACTTTGAAGACTTGTGCATGGCATTCCTTGCCGA GGACCATCCTAGTGTCGATATGTGCTACAAGGTCATTCGTGCAAAATGTGATTTCAGTCTTGATGAAGACATGAAAACTGTCCCCATCGAGACTTTCAAC TCCAAGACTAGTACATGGAATTTTTCCACGTTGACCTGTGTTCCATCTTTGTCACTATGTCCTTGGTCAGTAGCCACTGTGGTGAAAGGTGTTGTTCACT GGTATGCAGCACAGAGAAACTTAGCAATCTATGATCCTCATAATGGTGAGAGGCGCTTATCTTCGATTAAACTACCAGGCTCAATTGATTTTGAGGAGCG TGTTCTGGGGGAGTCCTTTGACGGGCGGTTGCAGTATGGTTGGAGCTGTAAGTCAGGGTTAGAGATATGGGTTCTTGAAAAGGAAGAAGCTGGCCATGCA ACGACTCCCTCAGATGATGGATATCCAAACAAAGGCTGGAACTTGAGATATAGATTGAACTTTAAAACAATGTGGAAGAAGAATCCCACATTCATGACAA AATCTTGCTTGCGAGACAAAGAAACTCAGATATTGTCATTTCTTCACCGAAACTCCAAATCTGTCTGCATCAGATCTGGTCCAGACATATTTCTCTTGCA CCTTGTGAACCAGAAGGTTGAAGCTGTTCTTTATAATGGTCGTGGCTCTTCCATTTCATGGGATTTCAGCAGAGTGGCACCATACTTTCGGCCAGATTGG CCTCATTCTTCCTTATGCCTCCCTGGAAAGAGCATGACATGA
AA sequence Show only first row Show all	>Potri.019G013900.2 pacid=42773867 polypeptide=Potri.019G013900.2.p locus=Potri.019G013900 ID=Potri.019G013900.2.v4.1 annot-version=v4.1 MKKKKKMRSGIDGVNAALSSDDILCEILLRVPPETVFSLIIVSKRWLHVICSSVFCQHYLRRWPLAYRMLGFFVCNNLYLGRGQNGVRRPRTEPAMPLLS TCKEGDDLKFSKTLKQYGYFIDSSNGLLLCGRHPKRYFVWNPITKQHYKIPKPRVYFEDLCMAFLAEDHPSVDMCYKVIRAKCDFSLDEDMKTVPIETFN SKTSTWNFSTLTCVPSLSLCPWSVATVVKGVVHWYAAQRNLAIYDPHNGERRLSSIKLPGSIDFEERVLGESFDGRLQYGWSCKSGLEIWVLEKEEAGHA TTPSDDGYPNKGWNLRYRLNFKTMWKKNPTFMTKSCLRDKETQILSFLHRNSKSVCIRSGPDIFLLHLVNQKVEAVLYNGRGSSISWDFSRVAPYFRPDW PHSSLCLPGKSMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	0	1
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131200 [exp]	3.46	0.7847
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	3.74	0.8038
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.009G106900 [exp]	6.70	0.7177	OST1.1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.009G108500 [exp]	6.92	0.7631
AT1G21780			BTB/POZ domain-containing prot...		Potri.005G178400 [exp]	11.31	0.7158
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	14.00	0.6996
AT3G47160			RING/U-box superfamily protein...		Potri.001G250800 [exp]	14.45	0.7123
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	15.49	0.7306	MBD912
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	15.49	0.6989
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	16.00	0.7559	RDR902,Pt-RDRP.1

Compare expression of checked genes

Potri.019G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.