Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08750 607 / 0 Peptidase C13 family (.1.2.3) AT2G25940 107 / 3e-25 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT4G32940 100 / 1e-22 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT3G20210 98 / 5e-22 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G62710 97 / 1e-21 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232900 [exp] 101 / 4e-23 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.018G059400 [exp] 96 / 2e-21 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.008G003400 [exp] 94 / 1e-20 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.003G113300 [exp] 89 / 5e-19 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 87 / 2e-18 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005520 [exp] 630 / 0 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006570 [exp] 622 / 0 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 509 / 0 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3) Lus10024446 [exp] 106 / 8e-25 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10007450 [exp] 106 / 1e-24 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 94 / 2e-20 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 92 / 4e-20 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10033344 [exp] 87 / 2e-18 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF01650 [poplar] [flax] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Potri.019G014000.1 pacid=42774487 polypeptide=Potri.019G014000.1.p locus=Potri.019G014000 ID=Potri.019G014000.1.v4.1 annot-version=v4.1 ATGATGATGGGGTTCAAGATTTACAGTTTGTTCAGTTTTAAAATGTCTATATTTCTGTTTTTTTTTCTTAACAATGCAATTGCATACAGTTCTCATTCTT CTTCAGCTGACACCACTATGCATACTAACAACTGGGCTGTCTTGGTTTGCACTTCTCGTTTCTGGTTTAATTATCGGCACATGGCTAACACTTTGTCATT GTATAGGACAGTTAAGCGATTAGGTATACCTGATGAGAGGATAATACTGATGTTGGCAGACGATATGGCTTGTAATGCTAGGAACAAGTACCCTGCACAA GTCTTCAACAATGAAAACCATAGACTTAACTTATATGGAGACAATGTGGAGGTGGACTATCGAGGTTATGAAGTAACAGTTGAAAATTTTTTACGTGTTC TGACTGGTCGCCATGAAACTGCTGTTCCAAGATCAAAGCGACTCTTAAGTGATGAAGGAAGCCACATTCTTCTGTACATGACAGGGCATGGAGGAGATGA ATTCTTAAAATTCCAGGACTCCGAAGAGCTCCAGAGTCATGATTTAGCTGATGCTGTAAAGCAAATGAAGGAGAAACGTAGATTCAAGGAATTGCTGATA ATGGTGGACACTTGCCAAGCTGCCACTCTATTCAATCAGCTCCATTCACCTGGTGTTTTGGCCATTGGGAGTAGCATGAAAGGAGAGAACTCGTACTCAC ATCACTTGGACTCTGATGTTGGTGTTTCTGTTGTGGATCGTTTTACATTCTATACACTTGCCTTTTTTGAGAGGCTAAATATGTATGACAACGCCTCATT GAGCAGTCTTTTTACTTCATATGATCCAAATACATTGATGTCAACTGCATATTACCGAACAGATTTATACCGACGACATTTGGATGAGGTACCTGTAACG AACTTTTTTGGCTCAGTAATGGAAACAATACATACAGATTCTGCCTATAGAGCTGTCCCTAGGAAAATGTCCAAAAGGGCTGGAATCAATATGGCTGTTG AAAAATCAGTTCAACATGATGATAGAAGAACTTTGATAGATTCAAATGTTCAGGACCCAACTAGTCATATAAAGACAAAGGATCAAAATTGCCCCTTTAC ACGGACAATGAACACATTTTTTGACAAGGTGGAAAGAATTGAACATCCTGACTCCTTGGTGAATTACGGATTGATATTGATGCTTCCTCTTTTGATGGTT TCTGTGTGGCTATCATCGTGA
AA sequence Show only first row Show all	>Potri.019G014000.1 pacid=42774487 polypeptide=Potri.019G014000.1.p locus=Potri.019G014000 ID=Potri.019G014000.1.v4.1 annot-version=v4.1 MMMGFKIYSLFSFKMSIFLFFFLNNAIAYSSHSSSADTTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQ VFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLI MVDTCQAATLFNQLHSPGVLAIGSSMKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFTSYDPNTLMSTAYYRTDLYRRHLDEVPVT NFFGSVMETIHTDSAYRAVPRKMSKRAGINMAVEKSVQHDDRRTLIDSNVQDPTSHIKTKDQNCPFTRTMNTFFDKVERIEHPDSLVNYGLILMLPLLMV SVWLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08750			Peptidase C13 family (.1.2.3)		Potri.019G014000 [exp]	0	1
AT1G52730			Transducin/WD40 repeat-like su...		Potri.003G059500 [exp]	1.00	0.8266
AT3G09735			S1FA-like DNA-binding protein ...		Potri.006G130200 [exp]	7.93	0.8166	S1FA3.1
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	10.95	0.7860
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	13.41	0.7979	Pt-PMP.1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	13.49	0.7863
AT5G11280			unknown protein		Potri.006G251600 [exp]	17.74	0.7855
AT3G61790			Protein with RING/U-box and TR...		Potri.003G198600 [exp]	24.00	0.7605
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	31.98	0.7220
AT2G26680			unknown protein		Potri.014G017900 [exp]	32.24	0.6874
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.008G194900 [exp]	39.64	0.7889	Pt-POR1.1

Compare expression of checked genes

Potri.019G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.