Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04590 181 / 2e-53 AT-hook AT hook motif DNA-binding family protein (.1.2) AT4G25320 120 / 2e-30 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 116 / 2e-29 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 114 / 8e-29 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 113 / 3e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 112 / 5e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 111 / 3e-27 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 108 / 2e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 106 / 8e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 107 / 9e-26 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044000 [exp] 336 / 7e-114 AT3G04590 171 / 2e-49 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 131 / 3e-35 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.003G090900 [exp] 131 / 1e-34 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 129 / 4e-34 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 127 / 2e-33 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 126 / 3e-33 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.005G256500 [exp] 127 / 6e-33 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G115800 [exp] 121 / 1e-31 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 120 / 3e-31 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005518 [exp] 192 / 1e-57 AT3G04590 238 / 9e-75 AT hook motif DNA-binding family protein (.1.2) Lus10006573 [exp] 169 / 5e-51 AT3G04590 181 / 1e-55 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 123 / 5e-32 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 122 / 2e-31 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10031696 [exp] 120 / 1e-30 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 118 / 4e-30 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 117 / 9e-30 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10011067 [exp] 117 / 1e-29 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10038903 [exp] 116 / 2e-29 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 111 / 3e-28 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.019G014200.1 pacid=42773960 polypeptide=Potri.019G014200.1.p locus=Potri.019G014200 ID=Potri.019G014200.1.v4.1 annot-version=v4.1 ATGGAACTCAACGACCCACGCCAGCAGCAGCATCACCACTTCACCTCTTACTTCTCCTCCACTCCCACCACCACCAACACCCCATCACCCCCCAATGGCC TCCTGCCACCTCATCACCCCACAGACTCAACCACCCCTACCGGGTCCCACTTGCTCTACCCTCATTCAATGGGACCCTCAACCACGGCTACAGTGACAGG AGGAGGAGCACCAGTGGAGGCAACATCAGCAAAGAGAAAGAGAGGGAGGCCCAGAAAGTATGGGACTCCTGAGCTGGCTTTGGCTGCCAAGAAAACGGCT ACATCTGCTTCTGTTGCTGCGTCCAGAGAAAGGAAGGAACAACACCAAGCTGGTTCTTCTTCCACTACCTCCTCTTTTTCAGGTTCTTCTTCCAAGAAAT CTCAACATGTTCTTGGCACTGCTGGGCATGGTTTTACACCACATGTTATTACTGTAGCTGCGGGTGAGGATGTTGGCCAGAAAATCATTCAATTCCTGCA ACAAAGCACGCGTGAAATGTGTATTCTATCTGCATCTGGTTCAGTCATGAATGTATCTCTTCGCCAACCAGCAACTTCAGGAGGCAACATTTCATATGAG GGCCGATTTGAGATCATTTCTCTGTCTGGATCTTATATACGTACTGACATGGGGGGAAGAGCAGGTGGCCTCAGTGTATGCCTTTCTGATTCAAATGGCC AGATCATTGGAGGAGGAGTTGGTGGACCTCTAAAGGCTGCTGGCCCTGTGCAGGTCATTGTCGGTACTTTTGTGCTTGACAACAAGAAGGATGGTAGTGG AAAAGGTGATGCATCTGGCAGCAAGCTTCCATCACCAGTTAAGGCATCAGTACCAAGTTTTGGCTTCCGCTTACCAGTTGAATCTCCTGTGAGGAATCCA GCGAGGGGAAATGATGACCTTCTTACCGTAGGTGGAGGCAATCCATTTACAATGCAACCTTCCACTATGCATTTATTATCTGCAAGAACCATGGATTGGA GGAGCAGTCCAGATGTCAGAACAACTGCAGGTTATGATTTTACAGGAAGAACAGGTCATGGAGGATCCCAATCTCCTGTAAACGGTGACTATGATTGA
AA sequence Show only first row Show all	>Potri.019G014200.1 pacid=42773960 polypeptide=Potri.019G014200.1.p locus=Potri.019G014200 ID=Potri.019G014200.1.v4.1 annot-version=v4.1 MELNDPRQQQHHHFTSYFSSTPTTTNTPSPPNGLLPPHHPTDSTTPTGSHLLYPHSMGPSTTATVTGGGAPVEATSAKRKRGRPRKYGTPELALAAKKTA TSASVAASRERKEQHQAGSSSTTSSFSGSSSKKSQHVLGTAGHGFTPHVITVAAGEDVGQKIIQFLQQSTREMCILSASGSVMNVSLRQPATSGGNISYE GRFEIISLSGSYIRTDMGGRAGGLSVCLSDSNGQIIGGGVGGPLKAAGPVQVIVGTFVLDNKKDGSGKGDASGSKLPSPVKASVPSFGFRLPVESPVRNP ARGNDDLLTVGGGNPFTMQPSTMHLLSARTMDWRSSPDVRTTAGYDFTGRTGHGGSQSPVNGDYD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Potri.019G014200 [exp]	0	1
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	6.00	0.9471
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	6.48	0.9616	RPOD1.1
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Potri.013G044000 [exp]	9.11	0.9158
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	11.48	0.9466
AT2G48070		RPH1	resistance to phytophthora 1 (...		Potri.014G137300 [exp]	18.65	0.9469
AT3G53920		SIG3, SIGC	SIGMA FACTOR 3, RNApolymerase ...		Potri.006G234400 [exp]	20.12	0.9423
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	20.66	0.9449
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	24.39	0.9462	CCD1.5
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	27.16	0.9461
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	27.74	0.9379

Compare expression of checked genes

Potri.019G014200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.