Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ETR7,Pt-EIN4.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04580 959 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 748 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 501 / 1e-168 ERS2 ethylene response sensor 2 (.1) AT1G66340 496 / 1e-165 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 369 / 2e-118 ERS1 ethylene response sensor 1 (.1) AT5G35750 97 / 1e-20 AHK2 histidine kinase 2 (.1) AT1G27320 91 / 2e-18 AHK3 histidine kinase 3 (.1) AT2G01830 79 / 1e-14 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G10720 66 / 8e-11 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 64 / 4e-10 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044100 [exp] 1357 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.010G074300 [exp] 950 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 918 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 488 / 2e-162 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 484 / 6e-161 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 394 / 1e-127 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.014G164700 [exp] 89 / 6e-18 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 82 / 6e-16 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 79 / 9e-15 AT1G27320 1425 / 0.0 histidine kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006574 [exp] 1097 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 1088 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 1081 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 1077 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10021880 [exp] 882 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 879 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 875 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 871 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 485 / 2e-161 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10020778 [exp] 484 / 5e-161 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0161 [poplar] [flax] GAF PF01590 [poplar] [flax] GAF GAF domain
Representative CDS sequence Show only first row Show all	>Potri.019G014300.1 pacid=42773326 polypeptide=Potri.019G014300.1.p locus=Potri.019G014300 ID=Potri.019G014300.1.v4.1 annot-version=v4.1 ATGTTAAGAGCATTAGCTTCTAGATTCTTGCTGATTTCATATCTAGCGATCTTGGTCACTGCAAGTGACAATGACTTTGCGAATTGTAATTGCGATGATG AGGGTTTTTGGAGCATACACAACATTATGGAAGCTCAGAGAGTGAGTGATGTTTTTATTGCAATAGCGTATTTTTCGATTCCAATCGAGCTTCTTTGGTT TATTAGCTGCTCCAACTTTCCTTTCAAATGGGTCCTTCTTCAGTTTATAGCATTCATAGTCCTTTGTGGACTGACACATTTGATCAATGCATGGACTTAT TATGGACCACACTCATTCCAGCTGATACTGTCCCTCACCATTGCCAAATTCCTCACGGCCTTGGTCTCTTGTGCAACCGCCATAACCCTCTTAACTCTGA TTCCTCTTCTTCTCAAATGGAAGGTGAGGGAGCTTTTCTTAAAGCAAAATGTGTTGGAATTAGACCAAGAGGTGGGGATGATGAAGAAGCAAAAGGAAGC TAGTTGGCATGTTAGGATGCTAACGCAAGAAATCAGGAAGTCACTTGATAAGCATACAATATTGTATACCACTCTGGTTGAGCTTTCTCAGACTTTAGAT TTGCATAATTGTGCTGTATGGATGCCTAATGAGAATAGAACGGAGTTCCATCTCACCCATGAGTTGAAGGGCAATTCTAAAATTTATCGCCGTTCTATCC CGGTAAATGATCCAGATGTGTTAGAAATACAAGGTAGCAAGGGGGTCAAGGTTTTGAGGCCTGATTCAGCTCTTGGTGCTTCAAGTGGTAGAGAGTTGGA GGAGTCAGGTGCTGTGGCAGCAATCCGGATGCCAATGCTACAGGTTTCAAATTTCAAAGGGGGGACACCTGAATTAGTGGATACTTGTTATGCTATACTG GTTTTGGTTCTTCCAAGCATGAGTTGTAGAGGCTGGAGCCCTGAGGAATTGGAAATAGTGGAAGTAGTTGCTGATCAAGTAGCTGTGGCTTTGTCTCATG CGGCAGTTCTTGAAGAATCAAAAGTCATGAGAGAGAAACTGAGTGAGCAAAATCGTGCACTGCAACAGGCAAGGAATAATGCAATGATGGCAAGCCAGGC AAGGAATTCCTTTCAAAAAGTGATGAGCCATGGGATGAGGAGACCAATGCACTCAATCCTGGGATTGCTCTCTATGTTCCAAAATGATAATATGGGCTTT GAGCAAAGGATTGTTATTGACACATTGGTGAAAACCAGCAATGTGCTTTCAACTTTGATTAATGATGTGATGGATATTTCAGCAGAAGATAACACCGGAA GGTTCCCTTTAGGGATGAGGCCCTTTCGTCTACGCTCCATGATCAAAGAAGCTTGTTGCCTTGCTAAGTGCTTGTGTGTGTATAAAGGTTTTGATTTTGA ACTTGATGTTCAAAGTTCTTTGCCTGATCTAGTGATAGGAGATGAAAGAAGGGCCTTTCAAGTTATTTTACACATGGTTGGATATCTTTTAAATATCTAT GATGGAGGGGGGAATGTCATATTTCGAGTTTTTTCAGAGAGTGATAGCGAGGGCAAGACAGATAGAATGTTGGGGATGTGGAAATCAAATGCTCCTGATG AGTTTGTATGTATAAAGTTTGACATGGAGATCAGAGAAGGAAGTTCTCTATCAGATGGAGCTAGCTCAACCACAAATTCTTCTGGTAGGAGGCAAAACAG TGCTGAAGCTAAGGAGGGTCTGGGCTTCATCATGTGCAAAAGGCTTGTACAGATGATGCAAGGTAATATCTGGATATCTTTGAACCCTCTGGGTTTTGCA CAGAGCATGACTCTGGTTCTTCGGTTTCAAATCCGACCATCTTATGGAAGAGCCACATTTGCCTCTGGACTTTCCTCAGAACAACCAAGTTCCATTCCTC AGTTCAGAGGCCTTCGAGTTATACTTGCTGATGATGATGCTTTAAACCGAACCGTTACCAAGAAGTTGCTTGAGAAGTTAGGTTGTGAAGTGACTGCTGT TTCATCCGGGTTTGAATGCCTTAGTGCTCTTAGCTCTGCTGAAAATTCTTTCAGACTAGTTGTTTTAGATATTCAAATGCCAGAAATGGATGGGTTCGAA GTGGCAACGCGAATCCGGAAGATCCGAAGTCGTAGTTGGCCATTGATTATAGCTGTGACTTCCAGTGCTGAGGATAATGTTTGGGAGAGATGCCTGCAGA TGGGAATGAATGGAATGATCCGAAAACCTGTTCTCTTACAAGGGATGGCAGATGAGCTTCAAAGAGTTCTTCAGCGGCCCGGCGAGGGATGA
AA sequence Show only first row Show all	>Potri.019G014300.1 pacid=42773326 polypeptide=Potri.019G014300.1.p locus=Potri.019G014300 ID=Potri.019G014300.1.v4.1 annot-version=v4.1 MLRALASRFLLISYLAILVTASDNDFANCNCDDEGFWSIHNIMEAQRVSDVFIAIAYFSIPIELLWFISCSNFPFKWVLLQFIAFIVLCGLTHLINAWTY YGPHSFQLILSLTIAKFLTALVSCATAITLLTLIPLLLKWKVRELFLKQNVLELDQEVGMMKKQKEASWHVRMLTQEIRKSLDKHTILYTTLVELSQTLD LHNCAVWMPNENRTEFHLTHELKGNSKIYRRSIPVNDPDVLEIQGSKGVKVLRPDSALGASSGRELEESGAVAAIRMPMLQVSNFKGGTPELVDTCYAIL VLVLPSMSCRGWSPEELEIVEVVADQVAVALSHAAVLEESKVMREKLSEQNRALQQARNNAMMASQARNSFQKVMSHGMRRPMHSILGLLSMFQNDNMGF EQRIVIDTLVKTSNVLSTLINDVMDISAEDNTGRFPLGMRPFRLRSMIKEACCLAKCLCVYKGFDFELDVQSSLPDLVIGDERRAFQVILHMVGYLLNIY DGGGNVIFRVFSESDSEGKTDRMLGMWKSNAPDEFVCIKFDMEIREGSSLSDGASSTTNSSGRRQNSAEAKEGLGFIMCKRLVQMMQGNIWISLNPLGFA QSMTLVLRFQIRPSYGRATFASGLSSEQPSSIPQFRGLRVILADDDALNRTVTKKLLEKLGCEVTAVSSGFECLSALSSAENSFRLVVLDIQMPEMDGFE VATRIRKIRSRSWPLIIAVTSSAEDNVWERCLQMGMNGMIRKPVLLQGMADELQRVLQRPGEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Potri.019G014300 [exp]	0	1	ETR7,Pt-EIN4.4
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	8.12	0.8584
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	11.74	0.8496
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	16.97	0.8332
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	18.57	0.8481
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	20.68	0.8447
AT5G13950			unknown protein		Potri.002G237800 [exp]	24.39	0.8422
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	27.62	0.8284
AT1G72390			unknown protein		Potri.001G165800 [exp]	34.35	0.8244
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	36.00	0.8271
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	40.47	0.8228

Compare expression of checked genes

Potri.019G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.