Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 330 / 2e-112 ATCXE18 carboxyesterase 18 (.1) AT5G27320 245 / 3e-79 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 231 / 7e-74 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 232 / 8e-74 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 153 / 7e-44 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G62180 152 / 2e-43 ATCXE20 carboxyesterase 20 (.1) AT2G45600 132 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 131 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 131 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 124 / 1e-32 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014306 [exp] 394 / 2e-139 AT5G23530 0 / 1 carboxyesterase 18 (.1) Potri.001G459400 [exp] 372 / 5e-129 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 351 / 7e-121 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.002G213100 [exp] 241 / 1e-77 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 241 / 1e-77 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 234 / 2e-74 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 230 / 2e-73 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.016G065000 [exp] 152 / 1e-43 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 150 / 9e-43 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013774 [exp] 332 / 5e-113 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10039162 [exp] 329 / 3e-112 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10000928 [exp] 251 / 3e-81 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 247 / 6e-80 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 231 / 1e-73 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10029541 [exp] 194 / 3e-60 AT5G23530 256 / 2e-84 carboxyesterase 18 (.1) Lus10036168 [exp] 162 / 2e-47 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 157 / 3e-45 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018963 [exp] 155 / 3e-45 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10013377 [exp] 155 / 8e-42 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.019G014302.1 pacid=42774407 polypeptide=Potri.019G014302.1.p locus=Potri.019G014302 ID=Potri.019G014302.1.v4.1 annot-version=v4.1 ATGGCAGAAACACCAAGAACTCTTCGCCTCTCATTGAAGACCAGGCTCCTCCTCGCCGCCCACTCCTTTGGGATTCGCGCCGCCAGCCGTTCCGACCACA CCGTAAACCGCAGCGTATTGAACATCTTCGACCCCAAGGCCGCTGCTTCCGCCAAACCAATCAATGGGGTCTCGTCTTTCGACAACACTATTGACCCTAC CCGCAACCTGTGGTTCCGCCTCTACGCCCCCACATCCACCGCCACTACCGATGCTCTGTCTGTGATCATATTCTTTCATGGTGGGGGCTTCGCATTCATG GCGGCTAACTCAAAATCTTTTGACGTACTCTGCCGGCGACTTGCACGTGAAATTAATGCAGTTGTTATCTCTGTTAACTATCGGCTTGCTCCTGAGTACA AGTACCCATGCCAGTACGAAGATGGCTTTGATGCATTGAAATACATCGATGGCATGACCTTTGAGAATTTCCCAGCAAATTTGGATCTTGGAAGGTGTTT TATAGCAGGTGATAGTGCAGGGGGTAACTTGGCTCATCACGTCGTGCTCAAAGCTTGTGAACACACATTTTCTAACATAAAGATCAAGGGACTCATAGCA ATGCAGCCATTTTTCGGAGGGGAAGAAAGGACAGAATCAGAAATCAAGCTTGTTGGGGTTCCTTTAATATCAGTGGAACGTACAGACTGGATGTGGAAAG CGTTTCTGCCTGAGGGATCGGACCGAAACCACTCGGTGGTTAATGTTTTCGGACCAAATGCGGTGGATATTTCAGGCGTGAAGTTCCCTGCTACGTTACT CTTTGTCGGAGGGTTTGATCCCTTGCAAGATTGGCAGAAGAGGTACCATGAGGGGCTGAAGAAATCTGGGAAAGAAGTACATTTGGTAGAGTATCCAAAT GTTTTTCATGGGTTTTATTGCCTGCCTGAATCGCCTGAATTTTCTTTGTTGATCGGTGAGGTGAAGAGTTTTGTGCACAAGCAGTCATCTCTTACATAG
AA sequence Show only first row Show all	>Potri.019G014302.1 pacid=42774407 polypeptide=Potri.019G014302.1.p locus=Potri.019G014302 ID=Potri.019G014302.1.v4.1 annot-version=v4.1 MAETPRTLRLSLKTRLLLAAHSFGIRAASRSDHTVNRSVLNIFDPKAAASAKPINGVSSFDNTIDPTRNLWFRLYAPTSTATTDALSVIIFFHGGGFAFM AANSKSFDVLCRRLAREINAVVISVNYRLAPEYKYPCQYEDGFDALKYIDGMTFENFPANLDLGRCFIAGDSAGGNLAHHVVLKACEHTFSNIKIKGLIA MQPFFGGEERTESEIKLVGVPLISVERTDWMWKAFLPEGSDRNHSVVNVFGPNAVDISGVKFPATLLFVGGFDPLQDWQKRYHEGLKKSGKEVHLVEYPN VFHGFYCLPESPEFSLLIGEVKSFVHKQSSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	0	1
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	1.41	0.9753
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	2.64	0.9534
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	3.46	0.9563
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.001G312300 [exp]	4.47	0.9561
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	5.65	0.9523
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G017300 [exp]	7.07	0.9554
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	8.12	0.9237	Pt-MDPIP1.2
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.008G038300 [exp]	8.66	0.9220
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142900 [exp]	9.59	0.9232
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	9.94	0.9441

Compare expression of checked genes

Potri.019G014302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.