Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 221 / 2e-71 ATCXE18 carboxyesterase 18 (.1) AT5G27320 159 / 4e-47 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 155 / 8e-46 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 152 / 3e-44 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 109 / 2e-28 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45600 95 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 89 / 2e-20 ATCXE20 carboxyesterase 20 (.1) AT5G16080 86 / 1e-19 ATCXE17 carboxyesterase 17 (.1) AT2G45610 84 / 8e-19 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 81 / 1e-17 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014302 [exp] 393 / 5e-139 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 256 / 5e-85 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 246 / 6e-81 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.014G135900 [exp] 158 / 7e-47 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 157 / 2e-46 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 155 / 1e-45 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 150 / 7e-44 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 105 / 1e-26 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 103 / 5e-26 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013774 [exp] 231 / 8e-75 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10039162 [exp] 214 / 2e-68 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10000928 [exp] 163 / 1e-48 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 163 / 2e-48 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 159 / 5e-47 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10013771 [exp] 124 / 2e-36 AT5G23530 96 / 4e-25 carboxyesterase 18 (.1) Lus10008189 [exp] 120 / 2e-34 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10036168 [exp] 120 / 3e-32 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002907 [exp] 108 / 8e-28 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10013376 [exp] 107 / 2e-27 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.019G014306.1 pacid=42773991 polypeptide=Potri.019G014306.1.p locus=Potri.019G014306 ID=Potri.019G014306.1.v4.1 annot-version=v4.1 ATGGTGGGGGCTTCGCATTCATGGCGGCTAACTCAAAATCTTTTGACGTACTCTGCCGGCGACTTGCACGTGAAATTAATGCAGTTGTTATCTCTGTTAA CTATCGGCTTGCTCCTGAGTACAAGTACCCATGCCAGTACGAAGATGGCTTTGATGTTGAAATACATCGATGGCATGACCTTTGAGAATTTCCCAGCAAA TTTGGATCTTGGAAGGTGTTTTATAGCAGGTGATAGTGCAGGGGGTAACTTGGCTCATCACGTCGTGCTCAAAGCTTGTGAACACACATTTTCTAACATA AAGATCAAGGGACTCATAGCAATGCAGCCATTTTTCGGAGGGGAAGAAAGGACAGAATCAGAAATCAAGCTTGTTGGGGTTCCTTTAATATCAGTGGAAC GTACAGACTGGATGTGGAAGGCGTTTCTGCCTGAGGGATCGGACCGAAACCACTCGGTGGTTAATGTTTTCGGACCAAATGCGGTGGATATTTCAGGCGT GAAGTTCCCTGCTACGTTACTCTTTGTCGGAGGGTTCGATCCCTTGCAAGATTGGCAGAAGAGGTACCATGAGGGGCTGAAGAAATCTGGGAAAGAAGTA CATTTGGTAGAGTATCCAAATGTTTTTCATGGGTTTTATTGCCTACCTGAATCGCCTGAATTTTCTTTGTTGATCGGTGAGGTGAAGAGTTTTGTGCAAA AGCAGTCATCTCTTACATAG
AA sequence Show only first row Show all	>Potri.019G014306.1 pacid=42773991 polypeptide=Potri.019G014306.1.p locus=Potri.019G014306 ID=Potri.019G014306.1.v4.1 annot-version=v4.1 MVGASHSWRLTQNLLTYSAGDLHVKLMQLLSLLTIGLLLSTSTHASTKMALMLKYIDGMTFENFPANLDLGRCFIAGDSAGGNLAHHVVLKACEHTFSNI KIKGLIAMQPFFGGEERTESEIKLVGVPLISVERTDWMWKAFLPEGSDRNHSVVNVFGPNAVDISGVKFPATLLFVGGFDPLQDWQKRYHEGLKKSGKEV HLVEYPNVFHGFYCLPESPEFSLLIGEVKSFVQKQSSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	0	1
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	1.73	0.9687
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	2.82	0.9651
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G021332 [exp]	4.24	0.9625
AT1G79770			Protein of unknown function (D...		Potri.001G188700 [exp]	4.89	0.9581
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.008G093500 [exp]	5.19	0.9533
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	5.29	0.9617
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G188933 [exp]	6.24	0.9358
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.008G152300 [exp]	8.94	0.9303
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	9.94	0.9441
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	11.83	0.9453

Compare expression of checked genes

Potri.019G014306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.