Plant FIBer expression Database

Potri.019G014310 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G136301
[exp]
65 / 5e-13 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1)
Potri.T045350
[exp]
64 / 5e-13 AT4G27220 44 / 6e-05 NB-ARC domain-containing disease resistance protein (.1)
Potri.T045000
[exp]
65 / 6e-13 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1)
Potri.T045200
[exp]
62 / 4e-12 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1)
Potri.T013500
[exp]
59 / 7e-12 AT1G12220 54 / 6e-09 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Potri.018G135600
[exp]
61 / 8e-12 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145532
[exp]
61 / 2e-11 AT4G27190 266 / 2e-73 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G137900
[exp]
59 / 4e-11 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1)
Potri.T046001
[exp]
59 / 5e-11 AT4G27190 129 / 2e-31 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G014310.1 pacid=42774634 polypeptide=Potri.019G014310.1.p locus=Potri.019G014310 ID=Potri.019G014310.1.v4.1 annot-version=v4.1
ATGGATTCTGAGTTCTTAGCTATCAAATGGCTTTCAAAACAGTTGATTTTAAGTTTCATTTCAATAAATGCCAGTACCAACATTTGGAAGTGCTATAACA
TGGAGAGCTTGGTTTCGTCTTCTTGGCTCTGCTCTGCTCCACCATCATCTCCATCTTATCATGGTATATTTCTATTTTTAAAGAGTTTGATCTGCGATTC
TCTCCAACAAATTGGGATAACAAATTGTCAGATGCTGAAAAGGCTGGCAATTCATCTTCCGTTGCTTGAAAATGGCCAGCTATCTCATCCCCCTTCTCTT
AGAGTGATGGAGTACATCCAAAAGAATGGTGAGAGTCAGTGGTGGAATGGGAGCATCCTAATGCTAAGGATGTCCTTCGTCCCTTTATTATTTAAATGA
AA sequence
>Potri.019G014310.1 pacid=42774634 polypeptide=Potri.019G014310.1.p locus=Potri.019G014310 ID=Potri.019G014310.1.v4.1 annot-version=v4.1
MDSEFLAIKWLSKQLILSFISINASTNIWKCYNMESLVSSSWLCSAPPSSPSYHGIFLFLKSLICDSLQQIGITNCQMLKRLAIHLPLLENGQLSHPPSL
RVMEYIQKNGESQWWNGSILMLRMSFVPLLFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G014310
[exp]
0 1
AT3G47570 Leucine-rich repeat protein ki... Potri.016G029900
[exp]
11.48 0.6012
Potri.001G305200
[exp]
15.19 0.5553
AT2G27500 Glycosyl hydrolase superfamily... Potri.004G097400
[exp]
25.92 0.6173
AT4G14130 XTR7, XTH15 xyloglucan endotransglycosylas... Potri.002G060400
[exp]
28.28 0.6537
AT4G14130 XTR7, XTH15 xyloglucan endotransglycosylas... Potri.002G060500
[exp]
29.46 0.6507 Pt-EXT.12
AT4G16860 RPP5, RPP4 recognition of peronospora par... Potri.019G098800
[exp]
29.59 0.6510
AT3G14470 NB-ARC domain-containing disea... Potri.001G025400
[exp]
35.87 0.6430
AT1G67920 unknown protein Potri.008G134100
[exp]
36.98 0.6335
AT3G04280 ARR22 response regulator 22 (.1.2.3) Potri.003G177400
[exp]
38.26 0.5733
AT3G06890 unknown protein Potri.010G013100
[exp]
44.02 0.6253

Potri.019G014310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.