Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 125 / 5e-30 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 97 / 1e-20 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 94 / 7e-20 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 91 / 7e-19 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 90 / 1e-18 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12290 84 / 9e-17 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12210 81 / 9e-16 RFL1 RPS5-like 1 (.1) AT5G47250 80 / 1e-15 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 80 / 2e-15 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61310 70 / 2e-12 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014338 [exp] 752 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 734 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 734 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014312 [exp] 728 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 727 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014336 [exp] 723 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014334 [exp] 719 / 0 AT4G27220 135 / 3e-33 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014360 [exp] 713 / 0 AT4G27220 173 / 3e-46 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014346 [exp] 708 / 0 AT4G27220 317 / 1e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 66 / 7e-11 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011278 [exp] 45 / 0.0001 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 44 / 0.0003 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 44 / 0.0004 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10023051 [exp] 43 / 0.0007 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014320.1 pacid=42774702 polypeptide=Potri.019G014320.1.p locus=Potri.019G014320 ID=Potri.019G014320.1.v4.1 annot-version=v4.1 ATGCTTAATAGACTTGAATATGTCTGCTTATTGGAAAGTTCTTTTAATCATATACATGTCAAGATGCATGACTTGATTAGGGACATGGCTATCCACGTAC TGCTAGAGAACTCTCAAGTCATGGTTAAAGCAGGTGCGCAATTAAAAGAGCTGCCAGATACAGAGGAGTGGACGGAGAACCTGACGATTGTTTCACTAAT GAAGAACGAGATCGAAGAAATTCCTTCCAGCCATTCACCAATGTGTCCAAATTTGTCATCTCTATTTTTATGTGAGAATAAAGAGCTGCGATTGATTGCG GATTCATTTTTCAAGCAATTACATGGGCTCAAGGTCCTCGATCTGTCTCGCACAGGTATTGAAAATTTGCCAGACTCTGTCTCTGATTTGGTGAGTCTCA CTGCATTATTGCTCAATGATTGTACGAGATTAAGACATGTTCCATCATTAAAGAAGCTCAGGGAACTAAAGAGGTTGGATCTCTGTGGCACTGCACTTGA AAAGATGCCGCAAGGAATGGAATGCCTAACCAACCTGAGGTATCTTAGAATGAATGGATGTGGTGAAAAGGAGTTTCCTAGTGGGATATTACCAAAACTC TCTCACCTGCAAGTCTTTGTACTAGAACAGTTTACGGCGCGAGGTGATGGTCCAATAACAGTTAAAGGAAAGGAAGTAGGATCCTTGAGAAATTTGGAAA GTCTGGAGTGCCATTTCAAAGGTTTCTCTGACTTCGTGGAGTATCTCAGATCTTGGGATGGGATCCTATCATTAAGCACATACAGAATTTTAGTAGGAAT GGTGGATGAAGATTATTCGGCATACATTGAAGGTTATCCGGCATACATTGAAGATTATCCAAGTAAAACAGTTGCGTTGGGTAATTTGAGTTTCAATGGA GATAGAGATTTTCAGGTCAAGTTCTTAAAAGGCATTCAAGGACTGATTTGTCAATGCTTCGATGCAAGAAGTTTATGCGATGTTTTGTCATTAGAGAATG CAACTGAACTGGAGCGTATCAGAATTGAGGATTGCAATAACATGGAGAGCTTGGTTTCATCTTCTTGGTTCTGCTATGCTCCACCACCATTGCCATCATA TAATGGTACGTTTTCTGGTCTTAAAGAGTTTAATTGTTGTGGATGTAACAATATGAAGAAGTTGTTTCCACTTGTGTTGCTGCCAAACCTCGTAAACCTG GCAAGGATTGATGTTAGTTATTGTGAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAGCACCTCCAATCCCATCACAGAATTAATACTCC CAAAGTTAAGAACTCTGAATTTGTGTCATTTACCAGAATTGAAAAGCATTTATAGTGCAAAACTTATTTGCAATTCTCTTAAAGATATTAGGGTATTGCG TTGTGAGAAGCTGAAGAGGATGCCAATTTGTCTTCCGTTGCTTGAAAATGGCCAGCCATCCCCTCCCCTTTCTCTTGGAGAAATCGTAGTATATCCGGAA GAATGGTGGGAGACAGTAGTGGAGTGGGAGCATCCTAATGCTAAGGATGTCCTTCGTCCCTTTGTGAAGTTTTTGTAG
AA sequence Show only first row Show all	>Potri.019G014320.1 pacid=42774702 polypeptide=Potri.019G014320.1.p locus=Potri.019G014320 ID=Potri.019G014320.1.v4.1 annot-version=v4.1 MLNRLEYVCLLESSFNHIHVKMHDLIRDMAIHVLLENSQVMVKAGAQLKELPDTEEWTENLTIVSLMKNEIEEIPSSHSPMCPNLSSLFLCENKELRLIA DSFFKQLHGLKVLDLSRTGIENLPDSVSDLVSLTALLLNDCTRLRHVPSLKKLRELKRLDLCGTALEKMPQGMECLTNLRYLRMNGCGEKEFPSGILPKL SHLQVFVLEQFTARGDGPITVKGKEVGSLRNLESLECHFKGFSDFVEYLRSWDGILSLSTYRILVGMVDEDYSAYIEGYPAYIEDYPSKTVALGNLSFNG DRDFQVKFLKGIQGLICQCFDARSLCDVLSLENATELERIRIEDCNNMESLVSSSWFCYAPPPLPSYNGTFSGLKEFNCCGCNNMKKLFPLVLLPNLVNL ARIDVSYCEKMEEIIGTTDEESSTSNPITELILPKLRTLNLCHLPELKSIYSAKLICNSLKDIRVLRCEKLKRMPICLPLLENGQPSPPLSLGEIVVYPE EWWETVVEWEHPNAKDVLRPFVKFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014320 [exp]	0	1
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.004G132500 [exp]	12.00	0.8622	LCOSC2.4
AT2G14255			Ankyrin repeat family protein ...		Potri.001G287000 [exp]	18.22	0.8143
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.002G262500 [exp]	30.65	0.8082
AT1G28760			Uncharacterized conserved prot...		Potri.019G039401 [exp]	38.07	0.7832
					Potri.004G153850 [exp]	40.47	0.8616
AT4G28050		TET7	tetraspanin7 (.1)		Potri.001G129300 [exp]	42.26	0.8605
AT3G11290			unknown protein		Potri.001G256500 [exp]	44.27	0.8653
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	48.08	0.8643
					Potri.006G174801 [exp]	48.57	0.8623
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165001 [exp]	54.96	0.7797

Compare expression of checked genes

Potri.019G014320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.